Analysis of interatomic Contacts of Structural Units in PDB entry:
1T09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T09 entry

There are 2 chains in PDB entry 1T09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 414
B
 MET 1LEU 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 1T09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 30Right-handed alpha
Helix 2
2
A
45 52Right-handed alpha
Helix 3
3
A
54 68Right-handed alpha
Helix 4
4
A
79 86Right-handed alpha
Helix 5
5
A
94 104Right-handed alpha
Helix 6
6
A
186 204Right-handed alpha
Helix 7
7
A
218 234Right-handed alpha
Helix 8
8
A
235 242Right-handed alpha
Helix 9
9
A
251 260Right-handed alpha
Helix 10
10
A
287 289Right-handed 310
Helix 11
11
A
312 321Right-handed alpha
Helix 12
12
A
329 348Right-handed alpha
Helix 13
13
A
349 369Right-handed alpha
Helix 14
14
A
373 382Right-handed alpha
Helix 15
15
A
383 386Right-handed 310
Helix 16
16
A
387 391Right-handed 310
Helix 17
17
A
393 413Right-handed alpha
Helix 18
18
B
16 31Right-handed alpha
Helix 19
19
B
45 52Right-handed alpha
Helix 20
20
B
54 68Right-handed alpha
Helix 21
21
B
79 86Right-handed alpha
Helix 22
22
B
94 104Right-handed alpha
Helix 23
23
B
186 203Right-handed alpha
Helix 24
24
B
218 235Right-handed alpha
Helix 25
25
B
235 242Right-handed alpha
Helix 26
26
B
250 260Right-handed alpha
Helix 27
27
B
279 284Right-handed alpha
Helix 28
28
B
287 289Right-handed 310
Helix 29
29
B
312 321Right-handed alpha
Helix 30
30
B
329 348Right-handed alpha
Helix 31
31
B
349 369Right-handed alpha
Helix 32
32
B
374 382Right-handed alpha
Helix 33
33
B
383 386Right-handed 310
Helix 34
34
B
387 391Right-handed 310
Helix 35
35
B
393 414Right-handed alpha
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There are 6 sheets in PDB entry 1T09. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 43first strand
Strand 2
A
5 14parallel
Strand 3
A
69 72parallel
Strand 4
A
303 307parallel
Strand 5
A
291 296anti-parallel
Strand 6
A
106 111anti-parallel
Strand 7
A
126 132anti-parallel
Strand 8
A
263 269parallel
Strand 9
A
207 211parallel
Strand 10
A
248 250parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
275 276parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
177 185anti-parallel
Strand 3
B
177 185anti-parallel
Strand 4
B
142 146anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
150 158anti-parallel
Strand 3
A
170 172anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
150 158anti-parallel
Strand 3
B
150 158anti-parallel
Strand 4
B
165 172anti-parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 43first strand
Strand 2
B
5 14parallel
Strand 3
B
69 72parallel
Strand 4
B
303 307parallel
Strand 5
B
291 296anti-parallel
Strand 6
B
106 111anti-parallel
Strand 7
B
126 132anti-parallel
Strand 8
B
263 269parallel
Strand 9
B
207 210parallel
Strand 10
B
246 248parallel
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