Analysis of interatomic Contacts of Structural Units in PDB entry:
1T9G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T9G entry

There are 6 chains in PDB entry 1T9G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 10LYS 395
B
LEU 10ASN 396
C
GLY 9ASN 396
D
LEU 10ASN 396
R
GLN 20LYS 203
S
LEU 4PRO 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 83 helices in PDB entry 1T9G. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
17 34Right-handed alpha
Helix 2
2
A
35 46Right-handed alpha
Helix 3
3
A
49 59Right-handed alpha
Helix 4
4
A
67 71Right-handed 310
Helix 5
5
A
76 91Right-handed alpha
Helix 6
6
A
91 112Right-handed alpha
Helix 7
7
A
113 121Right-handed alpha
Helix 8
8
A
121 127Right-handed alpha
Helix 9
9
A
143 147Right-handed 310
Helix 10
10
A
189 193Right-handed alpha
Helix 11
11
A
235 237Right-handed 310
Helix 12
12
A
243 279Right-handed alpha
Helix 13
13
A
291 321Right-handed alpha
Helix 14
14
A
325 357Right-handed alpha
Helix 15
15
A
361 370Right-handed alpha
Helix 16
16
A
371 374Right-handed 310
Helix 17
17
A
378 393Right-handed alpha
Helix 18
18
B
17 34Right-handed alpha
Helix 19
19
B
35 46Right-handed alpha
Helix 20
20
B
49 60Right-handed alpha
Helix 21
21
B
67 71Right-handed 310
Helix 22
22
B
76 91Right-handed alpha
Helix 23
23
B
91 112Right-handed alpha
Helix 24
24
B
113 125Right-handed alpha
Helix 25
25
B
143 147Right-handed 310
Helix 26
26
B
189 193Right-handed alpha
Helix 27
27
B
235 237Right-handed 310
Helix 28
28
B
243 279Right-handed alpha
Helix 29
29
B
291 321Right-handed alpha
Helix 30
30
B
325 352Right-handed alpha
Helix 31
31
B
353 355Right-handed 310
Helix 32
32
B
361 370Right-handed alpha
Helix 33
33
B
371 374Right-handed 310
Helix 34
34
B
378 394Right-handed alpha
Helix 35
35
C
17 34Right-handed alpha
Helix 36
36
C
34 46Right-handed alpha
Helix 37
37
C
49 59Right-handed alpha
Helix 38
38
C
67 71Right-handed 310
Helix 39
39
C
76 91Right-handed alpha
Helix 40
40
C
91 112Right-handed alpha
Helix 41
41
C
113 127Right-handed alpha
Helix 42
42
C
143 147Right-handed 310
Helix 43
43
C
189 193Right-handed alpha
Helix 44
44
C
235 237Right-handed 310
Helix 45
45
C
243 250Right-handed alpha
Helix 46
46
C
251 281Right-handed alpha
Helix 47
47
C
291 321Right-handed alpha
Helix 48
48
C
325 351Right-handed alpha
Helix 49
49
C
352 355Right-handed 310
Helix 50
50
C
361 370Right-handed alpha
Helix 51
51
C
371 374Right-handed 310
Helix 52
52
C
378 393Right-handed alpha
Helix 53
53
D
17 34Right-handed alpha
Helix 54
54
D
35 46Right-handed alpha
Helix 55
55
D
49 60Right-handed alpha
Helix 56
56
D
67 71Right-handed 310
Helix 57
57
D
76 89Right-handed alpha
Helix 58
58
D
91 112Right-handed alpha
Helix 59
59
D
113 121Right-handed alpha
Helix 60
60
D
121 127Right-handed alpha
Helix 61
61
D
143 147Right-handed 310
Helix 62
62
D
189 193Right-handed alpha
Helix 63
63
D
235 237Right-handed 310
Helix 64
64
D
243 281Right-handed alpha
Helix 65
65
D
291 321Right-handed alpha
Helix 66
66
D
325 351Right-handed alpha
Helix 67
67
D
351 357Right-handed alpha
Helix 68
68
D
361 370Right-handed alpha
Helix 69
69
D
371 374Right-handed 310
Helix 70
70
D
378 393Right-handed alpha
Helix 71
71
R
35 47Right-handed alpha
Helix 72
72
R
60 70Right-handed alpha
Helix 73
73
R
82 87Right-handed 310
Helix 74
74
R
88 104Right-handed alpha
Helix 75
75
R
113 128Right-handed alpha
Helix 76
76
R
170 173Right-handed 310
Helix 77
77
S
39 55Right-handed alpha
Helix 78
78
S
70 81Right-handed alpha
Helix 79
79
S
100 115Right-handed alpha
Helix 80
80
S
133 142Right-handed alpha
Helix 81
81
S
185 188Right-handed 310
Helix 82
82
S
194 204Right-handed alpha
Helix 83
83
S
210 215Right-handed alpha
Back to top of page

There are 17 sheets in PDB entry 1T9G. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
131 134first strand
Strand 2
A
175 181parallel
Strand 3
A
194 200anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
150 153first strand
Strand 2
A
157 168anti-parallel
Strand 3
A
222 233anti-parallel
Strand 4
A
206 211anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
282 283first strand
Strand 2
A
286 287anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
131 134first strand
Strand 2
B
175 181parallel
Strand 3
B
194 200anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
150 153first strand
Strand 2
B
157 168anti-parallel
Strand 3
B
222 233anti-parallel
Strand 4
B
206 211anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
282 283first strand
Strand 2
B
286 287anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
130 134first strand
Strand 2
C
173 181parallel
Strand 3
C
194 200anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
150 153first strand
Strand 2
C
157 168anti-parallel
Strand 3
C
222 233anti-parallel
Strand 4
C
206 208anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
282 283first strand
Strand 2
C
286 287anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
130 134first strand
Strand 2
D
173 181parallel
Strand 3
D
194 200anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
150 154first strand
Strand 2
D
157 168anti-parallel
Strand 3
D
222 233anti-parallel
Strand 4
D
206 208anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
282 283first strand
Strand 2
D
286 287anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
132 135first strand
Strand 2
R
164 168parallel
Strand 3
R
107 111parallel
Strand 4
R
22 25parallel
Strand 5
R
51 57parallel
Strand 6
R
73 80parallel
Strand 7
R
184 187parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
137 140first strand
Strand 2
R
143 148anti-parallel
Strand 3
R
153 158anti-parallel
Strand 4
S
224 228anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
197 202first strand
Strand 2
S
170 176anti-parallel
Strand 3
S
159 165anti-parallel
Strand 4
S
155 156anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
197 202first strand
Strand 2
S
170 176anti-parallel
Strand 3
S
159 165anti-parallel
Strand 4
S
146 152anti-parallel
Strand 5
S
179 183parallel
Strand 6
S
119 123parallel
Strand 7
S
5 9parallel
Strand 8
S
60 67parallel
Strand 9
S
85 90parallel
Strand 10
S
206 209parallel
Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
12 14first strand
Strand 2
S
36 38anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il