Analysis of interatomic Contacts of Structural Units in PDB entry:
1TJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TJJ entry

There are 3 chains in PDB entry 1TJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1ILE 164
B
 HIS 1ILE 164
C
 MET 2ILE 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1TJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
81 90Right-handed alpha
Helix 2
2
A
131 136Right-handed alpha
Helix 3
3
B
81 90Right-handed alpha
Helix 4
4
B
131 136Right-handed alpha
Helix 5
5
C
81 90Right-handed alpha
Helix 6
6
C
131 136Right-handed alpha
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There are 9 sheets in PDB entry 1TJJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
150 163anti-parallel
Strand 3
A
137 147anti-parallel
Strand 4
A
52 61anti-parallel
Strand 5
A
64 68anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
150 163parallel
Strand 3
A
137 147anti-parallel
Strand 4
A
52 61anti-parallel
Strand 5
A
78 79anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 25first strand
Strand 2
A
34 43anti-parallel
Strand 3
A
114 124anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
150 163anti-parallel
Strand 3
B
137 147anti-parallel
Strand 4
B
52 61anti-parallel
Strand 5
B
64 68anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
150 163parallel
Strand 3
B
137 147anti-parallel
Strand 4
B
52 61anti-parallel
Strand 5
B
78 79anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 25first strand
Strand 2
B
33 43anti-parallel
Strand 3
B
114 125anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 9first strand
Strand 2
C
150 162anti-parallel
Strand 3
C
137 147anti-parallel
Strand 4
C
52 61anti-parallel
Strand 5
C
64 67anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 30first strand
Strand 2
C
150 162parallel
Strand 3
C
137 147anti-parallel
Strand 4
C
52 61anti-parallel
Strand 5
C
78 79anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 25first strand
Strand 2
C
34 43anti-parallel
Strand 3
C
114 124anti-parallel
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