Analysis of interatomic Contacts of Structural Units in PDB entry:
1U6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1U6D entry

There is 1 chain in PDB entry 1U6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
PRO 322THR 609
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 1U6D


There are 8 sheets in PDB entry 1U6D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
351 354first strand
Strand 2
X
342 346anti-parallel
Strand 3
X
327 331anti-parallel
Strand 4
X
605 609anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
366 370first strand
Strand 2
X
373 377anti-parallel
Strand 3
X
393 396anti-parallel
Strand 4
X
403 405anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
380 383first strand
Strand 2
X
386 389anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
417 421first strand
Strand 2
X
424 428anti-parallel
Strand 3
X
440 444anti-parallel
Strand 4
X
449 452anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
431 432first strand
Strand 2
X
435 436anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
464 468first strand
Strand 2
X
471 475anti-parallel
Strand 3
X
487 491anti-parallel
Strand 4
X
496 499anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
511 515first strand
Strand 2
X
518 522anti-parallel
Strand 3
X
534 538anti-parallel
Strand 4
X
543 546anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
558 562first strand
Strand 2
X
565 569anti-parallel
Strand 3
X
580 585anti-parallel
Strand 4
X
590 596anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il