Analysis of interatomic Contacts of Structural Units in PDB entry:
1U9T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1U9T entry

There is 1 chain in PDB entry 1U9T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1PRO 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1U9T. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1 10Right-handed alpha
Helix 2
2
A
19 26Right-handed alpha
Helix 3
3
A
29 36Right-handed alpha
Helix 4
4
A
48 56Right-handed alpha
Helix 5
5
A
104 106Right-handed 310
Helix 6
6
A
144 156Right-handed alpha
Helix 7
7
A
180 188Right-handed alpha
Helix 8
8
A
193 203Right-handed alpha
Helix 9
9
A
205 211Right-handed alpha
Helix 10
10
A
224 237Right-handed alpha
Helix 11
11
A
327 328Right-handed 310
Helix 12
12
A
330 336Right-handed 310
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There are 2 sheets in PDB entry 1U9T. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
42 45first strand
Strand 2
A
108 112anti-parallel
Strand 3
A
123 127anti-parallel
Strand 4
A
133 139anti-parallel
Strand 5
A
62 67anti-parallel
Strand 6
A
71 77anti-parallel
Strand 7
A
274 279anti-parallel
Strand 8
A
266 270anti-parallel
Strand 9
A
259 262anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
82 83first strand
Strand 2
A
88 92anti-parallel
Strand 3
A
98 102anti-parallel
Strand 4
A
249 255anti-parallel
Strand 5
A
240 246anti-parallel
Strand 6
A
310 316anti-parallel
Strand 7
A
298 305anti-parallel
Strand 8
A
283 291anti-parallel
Strand 9
A
218 221anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il