Analysis of interatomic Contacts of Structural Units in PDB entry:
1UK0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UK0 entry

There are 2 chains in PDB entry 1UK0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1THR 350
B
 LYS 1THR 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1UK0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 16Right-handed alpha
Helix 2
2
A
17 28Right-handed alpha
Helix 3
3
A
41 61Right-handed alpha
Helix 4
4
A
64 79Right-handed alpha
Helix 5
5
A
93 119Right-handed alpha
Helix 6
6
A
131 136Right-handed alpha
Helix 7
7
A
147 160Right-handed alpha
Helix 8
8
A
162 166Right-handed 310
Helix 9
9
A
182 188Right-handed alpha
Helix 10
10
A
189 193Right-handed 310
Helix 11
11
A
207 215Right-handed alpha
Helix 12
12
A
224 228Right-handed 310
Helix 13
13
A
239 246Right-handed alpha
Helix 14
14
A
297 300Right-handed 310
Helix 15
15
A
302 306Right-handed 310
Helix 16
16
A
332 334Right-handed 310
Helix 17
17
B
5 16Right-handed alpha
Helix 18
18
B
17 27Right-handed alpha
Helix 19
19
B
36 40Right-handed 310
Helix 20
20
B
41 61Right-handed alpha
Helix 21
21
B
64 76Right-handed alpha
Helix 22
22
B
94 109Right-handed alpha
Helix 23
23
B
111 121Right-handed alpha
Helix 24
24
B
127 136Right-handed alpha
Helix 25
25
B
147 161Right-handed alpha
Helix 26
26
B
182 192Right-handed alpha
Helix 27
27
B
204 215Right-handed alpha
Helix 28
28
B
239 245Right-handed alpha
Helix 29
29
B
246 248Right-handed 310
Helix 30
30
B
297 300Right-handed 310
Helix 31
31
B
302 306Right-handed 310
Helix 32
32
B
332 334Right-handed 310
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There are 8 sheets in PDB entry 1UK0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 142first strand
Strand 2
A
176 180anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
336 347anti-parallel
Strand 3
A
255 264anti-parallel
Strand 4
A
196 202anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
327 330anti-parallel
Strand 3
A
286 289anti-parallel
Strand 4
A
268 271parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
313 315anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 141first strand
Strand 2
B
177 178anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 174first strand
Strand 2
B
336 344anti-parallel
Strand 3
B
258 264anti-parallel
Strand 4
B
196 202anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 237first strand
Strand 2
B
327 330anti-parallel
Strand 3
B
286 289anti-parallel
Strand 4
B
268 271parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 295first strand
Strand 2
B
313 315anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il