Analysis of interatomic Contacts of Structural Units in PDB entry:
1UMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UMZ entry

There are 2 chains in PDB entry 1UMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6ILE 272
B
 VAL 9ILE 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1UMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 14Right-handed alpha
Helix 2
2
A
20 22Right-handed 310
Helix 3
3
A
28 30Right-handed 310
Helix 4
4
A
154 158Right-handed 310
Helix 5
5
A
181 185Right-handed 310
Helix 6
6
A
189 193Right-handed 310
Helix 7
7
A
222 226Right-handed 310
Helix 8
8
A
226 230Right-handed 310
Helix 9
9
A
233 247Right-handed alpha
Helix 10
10
A
253 255Right-handed 310
Helix 11
11
A
264 270Right-handed alpha
Helix 12
12
B
10 14Right-handed alpha
Helix 13
13
B
20 22Right-handed 310
Helix 14
14
B
154 158Right-handed 310
Helix 15
15
B
181 185Right-handed 310
Helix 16
16
B
189 193Right-handed 310
Helix 17
17
B
222 226Right-handed 310
Helix 18
18
B
226 230Right-handed 310
Helix 19
19
B
233 247Right-handed alpha
Helix 20
20
B
253 255Right-handed 310
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There are 4 sheets in PDB entry 1UMZ. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 19first strand
Strand 2
A
43 47anti-parallel
Strand 3
A
168 175anti-parallel
Strand 4
A
70 77anti-parallel
Strand 5
A
85 91anti-parallel
Strand 6
A
100 106anti-parallel
Strand 7
A
115 117anti-parallel
Strand 8
A
248 251anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
32 37anti-parallel
Strand 3
A
195 208anti-parallel
Strand 4
A
51 61anti-parallel
Strand 5
A
128 134anti-parallel
Strand 6
A
138 143anti-parallel
Strand 7
A
146 152anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 19first strand
Strand 2
B
43 47anti-parallel
Strand 3
B
168 175anti-parallel
Strand 4
B
70 77anti-parallel
Strand 5
B
85 91anti-parallel
Strand 6
B
100 106anti-parallel
Strand 7
B
115 117anti-parallel
Strand 8
B
248 251anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 27first strand
Strand 2
B
32 37anti-parallel
Strand 3
B
195 208anti-parallel
Strand 4
B
51 61anti-parallel
Strand 5
B
128 134anti-parallel
Strand 6
B
138 143anti-parallel
Strand 7
B
146 152anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il