Analysis of interatomic Contacts of Structural Units in PDB entry:
1UY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UY5 entry

There are 2 chains in PDB entry 1UY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1ARG 372
T
 SER 1SER 43
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1UY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 61Right-handed alpha
Helix 2
2
A
78 91Right-handed alpha
Helix 3
3
A
97 101Right-handed 310
Helix 4
4
A
112 126Right-handed alpha
Helix 5
5
A
137 146Right-handed alpha
Helix 6
6
A
172 175Right-handed 310
Helix 7
7
A
181 198Right-handed alpha
Helix 8
8
A
202 216Right-handed alpha
Helix 9
9
A
222 232Right-handed alpha
Helix 10
10
A
252 257Right-handed alpha
Helix 11
11
A
258 261Right-handed 310
Helix 12
12
A
263 268Right-handed 310
Helix 13
13
A
273 283Right-handed alpha
Helix 14
14
A
289 295Right-handed alpha
Helix 15
15
A
302 306Right-handed 310
Helix 16
16
A
308 319Right-handed alpha
Helix 17
17
A
332 336Right-handed 310
Helix 18
18
A
337 349Right-handed alpha
Helix 19
19
A
352 356Right-handed 310
Helix 20
20
A
359 366Right-handed alpha
Helix 21
21
A
367 369Right-handed 310
Helix 22
22
T
6 16Right-handed alpha
Helix 23
23
T
32 41Right-handed alpha
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There are 6 sheets in PDB entry 1UY5. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
8 12anti-parallel
Strand 4
A
103 107parallel
Strand 5
A
131 136parallel
Strand 6
A
357 358anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
65 66anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
75 76anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
150 155anti-parallel
Strand 4
A
297 300parallel
Strand 5
A
329 330parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
176 178anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
247 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il