Analysis of interatomic Contacts of Structural Units in PDB entry:
1UZJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UZJ entry

There are 3 chains in PDB entry 1UZJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 1486ASP 1647
B
THR 2486ASP 2647
C
THR 3486ASP 3647
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1UZJ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1489 1493Right-handed 310
Helix 2
2
A
1558 1564Right-handed alpha
Helix 3
3
A
1582 1589Right-handed alpha
Helix 4
4
A
1608 1613Right-handed alpha
Helix 5
5
A
1614 1617Right-handed 310
Helix 6
6
B
2489 2493Right-handed 310
Helix 7
7
B
2558 2564Right-handed alpha
Helix 8
8
B
2582 2589Right-handed alpha
Helix 9
9
B
2608 2613Right-handed alpha
Helix 10
10
B
2614 2617Right-handed 310
Helix 11
11
C
3489 3493Right-handed 310
Helix 12
12
C
3558 3564Right-handed alpha
Helix 13
13
C
3582 3589Right-handed alpha
Helix 14
14
C
3608 3613Right-handed alpha
Helix 15
15
C
3614 3617Right-handed 310
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There are 18 sheets in PDB entry 1UZJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF, CA, CB, CC, CD, CE, CF,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1501 1504first strand
Strand 2
A
1509 1512anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1518 1519first strand
Strand 2
A
1526 1527anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1550 1557first strand
Strand 2
A
1532 1537anti-parallel
Strand 3
A
1569 1570anti-parallel
Strand 4
A
1575 1576anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1595 1597first strand
Strand 2
A
1604 1606anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1621 1625first strand
Strand 2
A
1628 1632anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1639 1640first strand
Strand 2
A
1645 1646anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2501 2504first strand
Strand 2
B
2509 2512anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2518 2519first strand
Strand 2
B
2526 2527anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2550 2557first strand
Strand 2
B
2532 2537anti-parallel
Strand 3
B
2569 2570anti-parallel
Strand 4
B
2575 2576anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2595 2597first strand
Strand 2
B
2604 2606anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2621 2625first strand
Strand 2
B
2628 2632anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2639 2640first strand
Strand 2
B
2645 2646anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
3501 3505first strand
Strand 2
C
3508 3512anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
3518 3519first strand
Strand 2
C
3526 3527anti-parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
3550 3557first strand
Strand 2
C
3532 3537anti-parallel
Strand 3
C
3569 3570anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
3595 3597first strand
Strand 2
C
3604 3606anti-parallel
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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
3621 3625first strand
Strand 2
C
3628 3632anti-parallel
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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
3639 3640first strand
Strand 2
C
3645 3646anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il