Analysis of interatomic Contacts of Structural Units in PDB entry:
1V0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V0B entry

There are 2 chains in PDB entry 1V0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1ASN 287
B
LYS 3ASN 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 1V0B. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
44 54Right-handed alpha
Helix 2
2
A
55 57Right-handed 310
Helix 3
3
A
86 93Right-handed alpha
Helix 4
4
A
98 119Right-handed alpha
Helix 5
5
A
127 129Right-handed 310
Helix 6
6
A
145 151Right-handed alpha
Helix 7
7
A
156 165Right-handed alpha
Helix 8
8
A
168 173Right-handed alpha
Helix 9
9
A
180 197Right-handed alpha
Helix 10
10
A
205 218Right-handed alpha
Helix 11
11
A
227 231Right-handed 310
Helix 12
12
A
245 250Right-handed alpha
Helix 13
13
A
254 265Right-handed alpha
Helix 14
14
A
268 272Right-handed 310
Helix 15
15
A
274 279Right-handed alpha
Helix 16
16
A
280 285Right-handed 310
Helix 17
17
B
48 53Right-handed alpha
Helix 18
18
B
54 57Right-handed 310
Helix 19
19
B
86 92Right-handed alpha
Helix 20
20
B
98 119Right-handed alpha
Helix 21
21
B
145 150Right-handed alpha
Helix 22
22
B
168 173Right-handed alpha
Helix 23
23
B
180 197Right-handed alpha
Helix 24
24
B
205 218Right-handed alpha
Helix 25
25
B
227 231Right-handed 310
Helix 26
26
B
245 250Right-handed 310
Helix 27
27
B
254 265Right-handed alpha
Helix 28
28
B
274 280Right-handed alpha
Helix 29
29
B
281 286Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1V0B. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
9 13first strand
Strand 2
A
16 22anti-parallel
Strand 3
A
28 33anti-parallel
Strand 4
A
74 79anti-parallel
Strand 5
A
65 71anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
84 85first strand
Strand 2
A
131 133anti-parallel
Strand 3
A
139 141anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
4 12first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
28 34anti-parallel
Strand 4
B
75 79anti-parallel
Strand 5
B
65 70anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
84 85first strand
Strand 2
B
131 133anti-parallel
Strand 3
B
139 141anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il