Analysis of interatomic Contacts of Structural Units in PDB entry:
1V7M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V7M entry

There are 6 chains in PDB entry 1V7M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
GLN 1GLU 212
H
GLU 1ASP 217
V
CYS 7CYS 151
M
GLN 1GLU 212
I
GLU 1ASP 217
X
CYS 7CYS 151
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1V7M. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
L
78 82Right-handed 310
Helix 2
2
L
120 126Right-handed alpha
Helix 3
3
L
182 186Right-handed alpha
Helix 4
4
H
28 32Right-handed 310
Helix 5
5
H
64 67Right-handed 310
Helix 6
6
H
89 93Right-handed 310
Helix 7
7
H
159 161Right-handed 310
Helix 8
8
H
189 191Right-handed 310
Helix 9
9
V
10 25Right-handed alpha
Helix 10
10
V
26 28Right-handed 310
Helix 11
11
V
48 54Right-handed alpha
Helix 12
12
V
55 78Right-handed alpha
Helix 13
13
V
85 90Right-handed alpha
Helix 14
14
V
91 109Right-handed alpha
Helix 15
15
V
123 125Right-handed 310
Helix 16
16
V
126 137Right-handed alpha
Helix 17
17
V
139 143Right-handed 310
Helix 18
18
M
78 82Right-handed 310
Helix 19
19
M
120 125Right-handed alpha
Helix 20
20
M
182 187Right-handed alpha
Helix 21
21
I
28 32Right-handed 310
Helix 22
22
I
53 57Right-handed 310
Helix 23
23
I
64 67Right-handed 310
Helix 24
24
I
76 78Right-handed 310
Helix 25
25
I
89 93Right-handed 310
Helix 26
26
I
159 161Right-handed 310
Helix 27
27
X
10 25Right-handed alpha
Helix 28
28
X
49 54Right-handed alpha
Helix 29
29
X
55 80Right-handed alpha
Helix 30
30
X
85 109Right-handed alpha
Helix 31
31
X
124 137Right-handed alpha
Helix 32
32
X
137 146Right-handed alpha
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There are 24 sheets in PDB entry 1V7M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
4 6first strand
Strand 2
L
19 29anti-parallel
Strand 3
L
61 74anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 13first strand
Strand 2
L
101 105parallel
Strand 3
L
83 89anti-parallel
Strand 4
L
33 37anti-parallel
Strand 5
L
44 48anti-parallel
Strand 6
L
52 53anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 13first strand
Strand 2
L
101 105parallel
Strand 3
L
83 89anti-parallel
Strand 4
L
96 97anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
113 117first strand
Strand 2
L
128 138anti-parallel
Strand 3
L
172 181anti-parallel
Strand 4
L
158 162anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
152 154first strand
Strand 2
L
143 149anti-parallel
Strand 3
L
190 197anti-parallel
Strand 4
L
204 209anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 7first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
80 86anti-parallel
Strand 4
H
70 75anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
110 114parallel
Strand 3
H
94 100anti-parallel
Strand 4
H
34 40anti-parallel
Strand 5
H
44 51anti-parallel
Strand 6
H
60 62anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
110 114parallel
Strand 3
H
94 100anti-parallel
Strand 4
H
105 106anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
123 127first strand
Strand 2
H
138 148anti-parallel
Strand 3
H
178 187anti-parallel
Strand 4
H
166 168anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
123 127first strand
Strand 2
H
138 148anti-parallel
Strand 3
H
178 187anti-parallel
Strand 4
H
172 173anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
154 157first strand
Strand 2
H
196 202anti-parallel
Strand 3
H
206 212anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
V
39 42first strand
Strand 2
V
118 121anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
4 6first strand
Strand 2
M
19 25anti-parallel
Strand 3
M
69 74anti-parallel
Strand 4
M
61 66anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
10 13first strand
Strand 2
M
101 105parallel
Strand 3
M
83 89anti-parallel
Strand 4
M
33 37anti-parallel
Strand 5
M
44 48anti-parallel
Strand 6
M
52 53anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
10 13first strand
Strand 2
M
101 105parallel
Strand 3
M
83 89anti-parallel
Strand 4
M
96 97anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
113 117first strand
Strand 2
M
128 138anti-parallel
Strand 3
M
172 181anti-parallel
Strand 4
M
158 162anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
152 154first strand
Strand 2
M
144 149anti-parallel
Strand 3
M
191 197anti-parallel
Strand 4
M
200 208anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
3 7first strand
Strand 2
I
18 25anti-parallel
Strand 3
I
80 85anti-parallel
Strand 4
I
70 75anti-parallel
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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
10 12first strand
Strand 2
I
110 114parallel
Strand 3
I
94 100anti-parallel
Strand 4
I
34 40anti-parallel
Strand 5
I
44 51anti-parallel
Strand 6
I
60 62anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
10 12first strand
Strand 2
I
110 114parallel
Strand 3
I
94 100anti-parallel
Strand 4
I
105 106anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
123 127first strand
Strand 2
I
138 148anti-parallel
Strand 3
I
178 187anti-parallel
Strand 4
I
166 168anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
123 127first strand
Strand 2
I
138 148anti-parallel
Strand 3
I
178 187anti-parallel
Strand 4
I
172 173anti-parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
154 157first strand
Strand 2
I
197 201anti-parallel
Strand 3
I
207 211anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
39 42first strand
Strand 2
X
118 121anti-parallel
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