Analysis of interatomic Contacts of Structural Units in PDB entry:
1VEP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VEP entry

There is 1 chain in PDB entry 1VEP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1TRP 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1VEP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 5Right-handed 310
Helix 2
2
A
21 25Right-handed 310
Helix 3
3
A
27 41Right-handed alpha
Helix 4
4
A
52 56Right-handed alpha
Helix 5
5
A
65 78Right-handed alpha
Helix 6
6
A
104 111Right-handed 310
Helix 7
7
A
134 154Right-handed alpha
Helix 8
8
A
155 160Right-handed 310
Helix 9
9
A
168 172Right-handed 310
Helix 10
10
A
196 212Right-handed alpha
Helix 11
11
A
213 222Right-handed alpha
Helix 12
12
A
227 231Right-handed 310
Helix 13
13
A
236 243Right-handed alpha
Helix 14
14
A
244 246Right-handed 310
Helix 15
15
A
247 277Right-handed alpha
Helix 16
16
A
304 309Right-handed alpha
Helix 17
17
A
312 324Right-handed alpha
Helix 18
18
A
345 361Right-handed alpha
Helix 19
19
A
374 388Right-handed alpha
Helix 20
20
A
397 403Right-handed alpha
Helix 21
21
A
404 415Right-handed alpha
Helix 22
22
A
443 447Right-handed 310
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There are 5 sheets in PDB entry 1VEP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
43 51parallel
Strand 3
A
81 87parallel
Strand 4
A
163 165parallel
Strand 5
A
284 287parallel
Strand 6
A
326 329parallel
Strand 7
A
364 367parallel
Strand 8
A
392 395parallel
Strand 9
A
12 16parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
125 126anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 461first strand
Strand 2
A
466 474anti-parallel
Strand 3
A
419 427anti-parallel
Strand 4
A
511 515parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 457first strand
Strand 2
A
436 441anti-parallel
Strand 3
A
479 486anti-parallel
Strand 4
A
492 495anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 457first strand
Strand 2
A
436 441anti-parallel
Strand 3
A
479 486anti-parallel
Strand 4
A
500 502anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il