Analysis of interatomic Contacts of Structural Units in PDB entry:
1VGC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VGC entry

There are 3 chains in PDB entry 1VGC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
CYS 1LEU 10
B
ILE 16TYR 146
C
THR 151ASN 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 1VGC. Click on helix number for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
H1
C
231 245Right-handed alpha
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There are 2 sheets in PDB entry 1VGC. Click on sheet of interest to get list of strands forming it: S1, S2,

There are 7 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
28 35first strand
Strand 2
B
42 49anti-parallel
Strand 3
B
50 56anti-parallel
Strand 4
B
101 110anti-parallel
Strand 5
B
81 92anti-parallel
Strand 6
B
63 69anti-parallel
Strand 7
B
28 35anti-parallel
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There are 7 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
133 141first strand
Strand 2
C
155 162anti-parallel
Strand 3
C
179 186anti-parallel
Strand 4
C
223 229anti-parallel
Strand 5
C
212 218anti-parallel
Strand 6
C
193 201anti-parallel
Strand 7
B
133 141anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il