Analysis of interatomic Contacts of Structural Units in PDB entry:
1VH7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VH7 entry

There is 1 chain in PDB entry 1VH7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 2GLU 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1VH7. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
31 43Right-handed alpha
Helix 2
2
A
54 73Right-handed alpha
Helix 3
3
A
85 96Right-handed alpha
Helix 4
4
A
103 109Right-handed alpha
Helix 5
5
A
110 121Right-handed alpha
Helix 6
6
A
153 164Right-handed alpha
Helix 7
7
A
183 191Right-handed alpha
Helix 8
8
A
192 194Right-handed 310
Helix 9
9
A
206 216Right-handed alpha
Helix 10
10
A
224 229Right-handed alpha
Helix 11
11
A
233 244Right-handed alpha
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There are 2 sheets in PDB entry 1VH7. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
16 17first strand
Strand 2
A
5 13anti-parallel
Strand 3
A
46 51parallel
Strand 4
A
77 80parallel
Strand 5
A
99 102parallel
Strand 6
A
125 134parallel
Strand 7
A
137 142anti-parallel
Strand 8
A
147 152anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
16 17first strand
Strand 2
A
5 13anti-parallel
Strand 3
A
220 223parallel
Strand 4
A
198 201parallel
Strand 5
A
167 172parallel
Strand 6
A
125 134parallel
Strand 7
A
137 142anti-parallel
Strand 8
A
147 152anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il