Analysis of interatomic Contacts of Structural Units in PDB entry:
1VJ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VJ7 entry

There are 2 chains in PDB entry 1VJ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 5LEU 371
B
 ILE 5GLU 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1VJ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 20Right-handed alpha
Helix 2
2
A
21 39Right-handed alpha
Helix 3
3
A
51 64Right-handed alpha
Helix 4
4
A
67 77Right-handed alpha
Helix 5
5
A
78 83Right-handed alpha
Helix 6
6
A
86 95Right-handed alpha
Helix 7
7
A
95 109Right-handed alpha
Helix 8
8
A
134 151Right-handed alpha
Helix 9
9
A
159 170Right-handed alpha
Helix 10
10
A
170 178Right-handed alpha
Helix 11
11
A
180 196Right-handed alpha
Helix 12
12
A
196 210Right-handed alpha
Helix 13
13
A
210 231Right-handed alpha
Helix 14
14
A
244 256Right-handed alpha
Helix 15
15
A
257 259Right-handed 310
Helix 16
16
A
262 265Right-handed 310
Helix 17
17
A
274 289Right-handed alpha
Helix 18
18
A
329 338Right-handed alpha
Helix 19
19
A
363 371Right-handed alpha
Helix 20
20
B
8 20Right-handed alpha
Helix 21
21
B
21 39Right-handed alpha
Helix 22
22
B
51 64Right-handed alpha
Helix 23
23
B
68 77Right-handed alpha
Helix 24
24
B
78 83Right-handed alpha
Helix 25
25
B
86 95Right-handed alpha
Helix 26
26
B
95 109Right-handed alpha
Helix 27
27
B
134 151Right-handed alpha
Helix 28
28
B
152 155Right-handed 310
Helix 29
29
B
156 170Right-handed alpha
Helix 30
30
B
170 178Right-handed alpha
Helix 31
31
B
180 196Right-handed alpha
Helix 32
32
B
196 208Right-handed alpha
Helix 33
33
B
217 232Right-handed alpha
Helix 34
34
B
244 251Right-handed alpha
Helix 35
35
B
274 289Right-handed alpha
Helix 36
36
B
329 338Right-handed alpha
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There are 2 sheets in PDB entry 1VJ7. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 240first strand
Strand 2
A
267 272anti-parallel
Strand 3
A
321 328parallel
Strand 4
A
311 316anti-parallel
Strand 5
A
297 298anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 240first strand
Strand 2
B
266 272anti-parallel
Strand 3
B
322 328parallel
Strand 4
B
311 315anti-parallel
Strand 5
B
297 298anti-parallel
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