Analysis of interatomic Contacts of Structural Units in PDB entry:
1VLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VLC entry

There is 1 chain in PDB entry 1VLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS -7TRP 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1VLC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 31Right-handed alpha
Helix 2
2
A
42 50Right-handed alpha
Helix 3
3
A
54 64Right-handed alpha
Helix 4
4
A
74 78Right-handed 310
Helix 5
5
A
85 90Right-handed alpha
Helix 6
6
A
90 98Right-handed alpha
Helix 7
7
A
110 117Right-handed 310
Helix 8
8
A
120 125Right-handed alpha
Helix 9
9
A
138 142Right-handed 310
Helix 10
10
A
160 177Right-handed alpha
Helix 11
11
A
191 206Right-handed alpha
Helix 12
12
A
218 228Right-handed alpha
Helix 13
13
A
229 232Right-handed 310
Helix 14
14
A
238 250Right-handed alpha
Helix 15
15
A
255 258Right-handed 310
Helix 16
16
A
288 304Right-handed alpha
Helix 17
17
A
305 322Right-handed alpha
Helix 18
18
A
326 330Right-handed 310
Helix 19
19
A
332 336Right-handed 310
Helix 20
20
A
338 354Right-handed alpha
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There are 2 sheets in PDB entry 1VLC. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 38first strand
Strand 2
A
0 8parallel
Strand 3
A
66 71parallel
Strand 4
A
268 272parallel
Strand 5
A
260 264anti-parallel
Strand 6
A
102 108anti-parallel
Strand 7
A
129 135anti-parallel
Strand 8
A
234 237parallel
Strand 9
A
181 186parallel
Strand 10
A
212 217parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 148first strand
Strand 2
A
153 156anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il