Analysis of interatomic Contacts of Structural Units in PDB entry:
1VQN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VQN entry

There are 37 chains in PDB entry 1VQN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
0
U 10 G 627
0
A 629 U 2586
0
U 2589 G 2618
0
U 2620 U 2620
0
A 2622 A 2914
9
U 3001 C 3122
4
C 74 C 75
5
C 74PHE 77
A
GLY 1GLY 237
B
PRO 1GLY 337
C
MET 1ARG 246
D
PHE 10VAL 174
E
PRO 1PRO 172
F
PRO 1ARG 119
G
ILE 12ASP 73
H
LYS 1ALA 171
J
ALA 4TRP 145
K
MET 1VAL 132
L
THR 1GLN 150
M
ALA 1ALA 194
N
ALA 1LEU 186
O
SER 1ARG 115
P
THR 1ALA 143
Q
PRO 1GLU 95
R
GLY 1PRO 150
S
SER 1ILE 81
T
SER 1ALA 119
U
ARG 4ARG 56
V
THR 1ASP 65
W
MET 1ARG 154
X
GLU 7GLU 88
Y
THR 95VAL 236
Z
ARG 10SER 82
1
THR 1GLU 56
2
GLY 1GLU 49
3
MET 1GLU 92
I
GLY 71GLU 140
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are150 helices in PDB entry 1VQN. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
4 11Right-handed alpha
Helix 2
2
A
12 17Right-handed 310
Helix 3
3
A
19 23Right-handed 310
Helix 4
4
A
97 99Right-handed 310
Helix 5
5
A
163 167Right-handed 310
Helix 6
6
A
171 180Right-handed alpha
Helix 7
7
A
190 194Right-handed 310
Helix 8
8
A
195 199Right-handed 310
Helix 9
9
B
108 112Right-handed 310
Helix 10
10
B
120 135Right-handed alpha
Helix 11
11
B
147 151Right-handed 310
Helix 12
12
B
170 185Right-handed alpha
Helix 13
13
B
213 219Right-handed alpha
Helix 14
14
B
224 229Right-handed 310
Helix 15
15
C
19 24Right-handed 310
Helix 16
16
C
27 42Right-handed alpha
Helix 17
17
C
103 118Right-handed alpha
Helix 18
18
C
120 128Right-handed alpha
Helix 19
19
C
142 147Right-handed 310
Helix 20
20
C
149 160Right-handed alpha
Helix 21
21
C
163 170Right-handed alpha
Helix 22
22
C
177 183Right-handed 310
Helix 23
23
C
201 206Right-handed alpha
Helix 24
24
C
219 224Right-handed alpha
Helix 25
25
C
225 228Right-handed 310
Helix 26
26
C
237 243Right-handed alpha
Helix 27
27
C
244 246Right-handed 310
Helix 28
28
D
37 45Right-handed alpha
Helix 29
29
D
77 85Right-handed alpha
Helix 30
30
D
87 91Right-handed 310
Helix 31
31
D
139 143Right-handed 310
Helix 32
32
D
158 168Right-handed alpha
Helix 33
33
E
55 77Right-handed alpha
Helix 34
34
E
106 110Right-handed 310
Helix 35
35
E
137 151Right-handed alpha
Helix 36
36
F
9 26Right-handed alpha
Helix 37
37
F
32 43Right-handed alpha
Helix 38
38
F
56 60Right-handed 310
Helix 39
39
F
62 69Right-handed alpha
Helix 40
40
F
79 87Right-handed alpha
Helix 41
41
F
104 118Right-handed alpha
Helix 42
42
G
13 28Right-handed alpha
Helix 43
43
G
63 72Right-handed alpha
Helix 44
44
H
2 6Right-handed 310
Helix 45
45
H
39 43Right-handed 310
Helix 46
46
H
59 78Right-handed alpha
Helix 47
47
H
142 154Right-handed alpha
Helix 48
48
H
155 157Right-handed 310
Helix 49
49
J
18 32Right-handed alpha
Helix 50
50
J
40 43Right-handed 310
Helix 51
51
J
49 63Right-handed alpha
Helix 52
52
J
74 85Right-handed alpha
Helix 53
53
J
91 99Right-handed alpha
Helix 54
54
J
122 126Right-handed 310
Helix 55
55
J
132 140Right-handed alpha
Helix 56
56
K
115 121Right-handed alpha
Helix 57
57
K
121 126Right-handed alpha
Helix 58
58
L
3 7Right-handed 310
Helix 59
59
L
23 28Right-handed 310
Helix 60
60
L
54 58Right-handed 310
Helix 61
61
L
66 71Right-handed alpha
Helix 62
62
L
94 96Right-handed 310
Helix 63
63
L
126 136Right-handed alpha
Helix 64
64
M
3 12Right-handed alpha
Helix 65
65
M
17 32Right-handed alpha
Helix 66
66
M
45 52Right-handed alpha
Helix 67
67
M
82 87Right-handed 310
Helix 68
68
M
96 109Right-handed alpha
Helix 69
69
M
138 143Right-handed alpha
Helix 70
70
M
147 156Right-handed 310
Helix 71
71
M
157 162Right-handed 310
Helix 72
72
M
164 171Right-handed alpha
Helix 73
73
M
187 191Right-handed 310
Helix 74
74
N
10 15Right-handed alpha
Helix 75
75
N
19 28Right-handed alpha
Helix 76
76
N
64 70Right-handed 310
Helix 77
77
N
77 95Right-handed alpha
Helix 78
78
N
113 125Right-handed alpha
Helix 79
79
N
132 136Right-handed 310
Helix 80
80
N
138 144Right-handed alpha
Helix 81
81
N
144 153Right-handed alpha
Helix 82
82
N
168 180Right-handed alpha
Helix 83
83
O
4 21Right-handed alpha
Helix 84
84
O
24 35Right-handed alpha
Helix 85
85
O
36 40Right-handed 310
Helix 86
86
O
45 52Right-handed alpha
Helix 87
87
O
82 93Right-handed alpha
Helix 88
88
O
98 105Right-handed alpha
Helix 89
89
P
3 14Right-handed alpha
Helix 90
90
P
17 19Right-handed 310
Helix 91
91
P
27 34Right-handed alpha
Helix 92
92
P
36 46Right-handed alpha
Helix 93
93
P
59 71Right-handed alpha
Helix 94
94
P
76 80Right-handed 310
Helix 95
95
P
83 88Right-handed alpha
Helix 96
96
P
89 111Right-handed alpha
Helix 97
97
P
115 128Right-handed alpha
Helix 98
98
P
133 142Right-handed alpha
Helix 99
99
Q
17 21Right-handed 310
Helix 100
100
Q
26 31Right-handed alpha
Helix 101
101
Q
53 57Right-handed 310
Helix 102
102
Q
87 89Right-handed 310
Helix 103
103
R
9 11Right-handed 310
Helix 104
104
R
24 36Right-handed alpha
Helix 105
105
R
39 52Right-handed alpha
Helix 106
106
R
81 102Right-handed alpha
Helix 107
107
R
105 109Right-handed 310
Helix 108
108
R
129 131Right-handed 310
Helix 109
109
S
11 21Right-handed alpha
Helix 110
110
S
33 46Right-handed alpha
Helix 111
111
S
73 79Right-handed alpha
Helix 112
112
T
3 13Right-handed alpha
Helix 113
113
T
15 22Right-handed 310
Helix 114
114
T
28 36Right-handed alpha
Helix 115
115
T
92 94Right-handed 310
Helix 116
116
T
105 114Right-handed alpha
Helix 117
117
U
33 42Right-handed alpha
Helix 118
118
U
45 49Right-handed 310
Helix 119
119
V
4 11Right-handed alpha
Helix 120
120
V
12 36Right-handed alpha
Helix 121
121
V
42 64Right-handed alpha
Helix 122
122
W
14 24Right-handed alpha
Helix 123
123
W
38 48Right-handed alpha
Helix 124
124
W
58 70Right-handed alpha
Helix 125
125
W
80 86Right-handed alpha
Helix 126
126
W
92 102Right-handed alpha
Helix 127
127
W
131 135Right-handed 310
Helix 128
128
W
142 153Right-handed alpha
Helix 129
129
X
15 20Right-handed 310
Helix 130
130
X
21 23Right-handed 310
Helix 131
131
X
24 41Right-handed alpha
Helix 132
132
X
44 46Right-handed 310
Helix 133
133
X
51 60Right-handed alpha
Helix 134
134
Y
110 124Right-handed alpha
Helix 135
135
Y
132 136Right-handed 310
Helix 136
136
Y
165 169Right-handed 310
Helix 137
137
Y
189 194Right-handed 310
Helix 138
138
Y
210 224Right-handed alpha
Helix 139
139
Z
10 15Right-handed 310
Helix 140
140
Z
19 34Right-handed alpha
Helix 141
141
Z
75 82Right-handed alpha
Helix 142
142
1
4 9Right-handed alpha
Helix 143
143
1
48 52Right-handed 310
Helix 144
144
2
4 18Right-handed alpha
Helix 145
145
2
22 30Right-handed alpha
Helix 146
146
3
34 44Right-handed alpha
Helix 147
147
3
49 54Right-handed 310
Helix 148
148
I
74 83Right-handed alpha
Helix 149
149
I
102 112Right-handed alpha
Helix 150
150
I
120 129Right-handed alpha
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There are 47 sheets in PDB entry 1VQN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
65 68first strand
Strand 2
A
54 60anti-parallel
Strand 3
A
39 47anti-parallel
Strand 4
A
79 81anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
93 95first strand
Strand 2
A
153 156anti-parallel
Strand 3
A
104 106anti-parallel
Strand 4
A
126 130anti-parallel
Strand 5
A
136 139anti-parallel
Strand 6
A
145 148anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
214 215first strand
Strand 2
A
227 228parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
37 38first strand
Strand 2
B
161 167anti-parallel
Strand 3
B
137 145anti-parallel
Strand 4
B
79 90anti-parallel
Strand 5
B
93 101anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
37 38first strand
Strand 2
B
161 167anti-parallel
Strand 3
B
137 145anti-parallel
Strand 4
B
79 90anti-parallel
Strand 5
B
187 188anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
327 330first strand
Strand 2
B
41 54anti-parallel
Strand 3
B
308 313anti-parallel
Strand 4
B
199 205anti-parallel
Strand 5
B
261 275anti-parallel
Strand 6
B
292 298anti-parallel
Strand 7
B
66 75anti-parallel
Strand 8
B
41 54anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
211 212first strand
Strand 2
B
255 256anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
12 17first strand
Strand 2
C
2 6anti-parallel
Strand 3
C
138 140parallel
Strand 4
C
233 236parallel
Strand 5
C
193 196parallel
Strand 6
C
211 214parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
72 73first strand
Strand 2
C
76 77anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
173 174first strand
Strand 2
C
186 187anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
50 52first strand
Strand 2
D
70 75anti-parallel
Strand 3
D
17 26anti-parallel
Strand 4
D
129 135anti-parallel
Strand 5
D
104 106anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
2 6first strand
Strand 2
E
46 51anti-parallel
Strand 3
E
38 43anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
12 16first strand
Strand 2
E
19 24anti-parallel
Strand 3
E
27 32anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
123 127first strand
Strand 2
E
130 135anti-parallel
Strand 3
E
80 87anti-parallel
Strand 4
E
165 170anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
94 98first strand
Strand 2
E
101 105anti-parallel
Strand 3
E
114 117anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
28 31first strand
Strand 2
F
95 99anti-parallel
Strand 3
F
48 51anti-parallel
Strand 4
F
74 77parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
32 34first strand
Strand 2
H
84 87anti-parallel
Strand 3
H
132 138anti-parallel
Strand 4
H
45 51anti-parallel
Strand 5
H
161 165anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
55 58first strand
Strand 2
H
119 127anti-parallel
Strand 3
H
93 97anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
10 13first strand
Strand 2
J
36 39parallel
Strand 3
J
101 103parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
45 47first strand
Strand 2
J
129 131anti-parallel
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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
7 8first strand
Strand 2
K
80 81anti-parallel
Strand 3
K
87 90anti-parallel
Strand 4
U
19 22parallel
Strand 5
U
28 31anti-parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
12 13first strand
Strand 2
K
46 47anti-parallel
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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
17 20first strand
Strand 2
K
26 34anti-parallel
Strand 3
K
52 60anti-parallel
Strand 4
K
68 75anti-parallel
Strand 5
K
94 98anti-parallel
Strand 6
K
17 20parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
112 114first strand
Strand 2
K
130 132parallel
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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
62 65first strand
Strand 2
L
106 109parallel
Strand 3
L
124 125parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
90 92first strand
Strand 2
L
119 122parallel
Strand 3
L
139 142parallel
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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
37 40first strand
Strand 2
M
60 68anti-parallel
Strand 3
M
126 134anti-parallel
Strand 4
M
113 122anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
56 62first strand
Strand 2
N
43 49anti-parallel
Strand 3
N
33 38anti-parallel
Strand 4
N
101 103parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
41 44first strand
Strand 2
O
57 65parallel
Strand 3
O
75 81parallel
Strand 4
O
94 97parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
41 44first strand
Strand 2
O
57 65parallel
Strand 3
O
111 113parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
21 23first strand
Strand 2
P
49 51anti-parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
80 86first strand
Strand 2
Q
70 77anti-parallel
Strand 3
Q
60 67anti-parallel
Strand 4
Q
38 41anti-parallel
Strand 5
Q
91 93anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
13 21first strand
Strand 2
R
138 148anti-parallel
Strand 3
R
110 122anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
57 58first strand
Strand 2
R
78 79anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
125 127first strand
Strand 2
R
133 135anti-parallel
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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
5 8first strand
Strand 2
S
23 28anti-parallel
Strand 3
S
62 68anti-parallel
Strand 4
S
49 56anti-parallel
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There are 6 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
39 41first strand
Strand 2
T
24 27anti-parallel
Strand 3
T
96 100parallel
Strand 4
T
47 50anti-parallel
Strand 5
T
59 66anti-parallel
Strand 6
T
71 74anti-parallel
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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
78 80first strand
Strand 2
T
86 88anti-parallel
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There are 5 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
W
115 117first strand
Strand 2
W
31 35anti-parallel
Strand 3
W
2 6anti-parallel
Strand 4
W
52 55anti-parallel
Strand 5
W
139 140parallel
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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
8 13first strand
Strand 2
X
69 77anti-parallel
Strand 3
X
82 86anti-parallel
Strand 4
X
48 50parallel
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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Y
96 99first strand
Strand 2
Y
233 236anti-parallel
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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Y
183 187first strand
Strand 2
Y
201 205parallel
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There are 3 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Z
47 51first strand
Strand 2
Z
54 57anti-parallel
Strand 3
Z
62 65anti-parallel
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There are 3 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
1
16 18first strand
Strand 2
1
25 28anti-parallel
Strand 3
1
33 34anti-parallel
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There are 2 strands in AS sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
2 4first strand
Strand 2
3
89 91parallel
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There are 4 strands in AT sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
6 11first strand
Strand 2
3
16 24anti-parallel
Strand 3
3
67 71anti-parallel
Strand 4
3
77 79anti-parallel
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There are 2 strands in AU sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
98 101first strand
Strand 2
I
137 140parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il