Analysis of interatomic Contacts of Structural Units in PDB entry:
1VRM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VRM entry

There is 1 chain in PDB entry 1VRM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 44GLU 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1VRM. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
67 86Right-handed alpha
Helix 2
2
A
93 100Right-handed alpha
Helix 3
3
A
109 126Right-handed alpha
Helix 4
4
A
134 142Right-handed alpha
Helix 5
5
A
146 150Right-handed 310
Helix 6
6
A
154 163Right-handed alpha
Helix 7
7
A
164 165Right-handed 310
Helix 8
8
A
166 168Right-handed 310
Helix 9
9
A
192 209Right-handed alpha
Helix 10
10
A
227 231Right-handed 310
Helix 11
11
A
298 324Right-handed alpha
Helix 12
12
A
325 328Right-handed 310
Helix 13
13
A
343 348Right-handed alpha
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There are 4 sheets in PDB entry 1VRM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
46 52first strand
Strand 2
A
55 62anti-parallel
Strand 3
A
213 218anti-parallel
Strand 4
A
221 226anti-parallel
Strand 5
A
256 261anti-parallel
Strand 6
A
289 296anti-parallel
Strand 7
A
330 335anti-parallel
Strand 8
A
340 342anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
106 107first strand
Strand 2
A
178 181anti-parallel
Strand 3
A
170 173anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
234 239first strand
Strand 2
A
246 252anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
266 269first strand
Strand 2
A
272 275anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il