Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1VZJ entry
There are 10 chains in PDB entry 1VZJ
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
LEU 3 | PHE 28 |
B
|
ASP 1 | TYR 31 |
C
|
ASP 1 | SER 32 |
D
|
ASP 1 | SER 32 |
E
|
THR 2 | PHE 28 |
F
|
ASP 1 | GLN 34 |
G
|
ASP 1 | GLN 34 |
H
|
ASP 1 | SER 32 |
I
|
LEU 1 | PHE 15 |
J
|
LEU 1 | PHE 15 |
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There are 10
helices in PDB entry 1VZJ. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 5 |
28 | Right-handed alpha |
Helix 2 |
2 | B
| 1 |
13 | Right-handed alpha |
Helix 3 |
3 | B
| 13 |
31 | Right-handed alpha |
Helix 4 |
4 | C
| 1 |
32 | Right-handed alpha |
Helix 5 |
5 | D
| 1 |
32 | Right-handed alpha |
Helix 6 |
6 | E
| 7 |
28 | Right-handed alpha |
Helix 7 |
7 | F
| 1 |
13 | Right-handed alpha |
Helix 8 |
8 | F
| 13 |
34 | Right-handed alpha |
Helix 9 |
9 | G
| 1 |
30 | Right-handed alpha |
Helix 10 |
10 | H
| 1 |
31 | Right-handed alpha |
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There are no sheets in PDB entry
1VZJ
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il