Analysis of interatomic Contacts of Structural Units in PDB entry:
1W0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1W0Y entry

There are 9 chains in PDB entry 1W0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 ILE 16PRO 257
L
 ALA 1LEU 5
L
 LEU 8LEU 13
L
 ARG 15ARG 15
L
 CYS 17LYS 18
L
 GLN 21PHE 24
L
 ALA 27ARG 28
L
 ILE 30GLU 142
T
 THR 6MET 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1W0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
H
55 60Right-handed 310
Helix 2
2
H
60 62Right-handed 310
Helix 3
3
H
125 129Right-handed alpha
Helix 4
4
H
129 129Right-handed 310
Helix 5
5
H
164 170Right-handed alpha
Helix 6
6
H
191 195Right-handed 310
Helix 7
7
H
234 243Right-handed alpha
Helix 8
8
L
5 9Right-handed 310
Helix 9
9
L
12 18Right-handed alpha
Helix 10
10
L
23 32Right-handed alpha
Helix 11
11
L
33 45Right-handed alpha
Helix 12
12
L
86 88Right-handed 310
Helix 13
13
L
93 98Right-handed 310
Helix 14
14
L
138 142Right-handed 310
Helix 15
15
T
59 64Right-handed alpha
Helix 16
16
T
101 106Right-handed alpha
Helix 17
17
T
143 148Right-handed alpha
Helix 18
18
T
149 151Right-handed 310
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There are 11 sheets in PDB entry 1W0Y. Click on sheet of interest to get list of strands forming it: HA, HB, LA, LB, LC, LD, TA, TB, TC, TD, TE,

There are 9 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
20 21first strand
Strand 2
H
156 163anti-parallel
Strand 3
H
180 183anti-parallel
Strand 4
H
226 230anti-parallel
Strand 5
H
206 215anti-parallel
Strand 6
H
198 203anti-parallel
Strand 7
H
135 140anti-parallel
Strand 8
H
156 163parallel
Strand 9
H
20 21anti-parallel
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There are 9 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
30 35first strand
Strand 2
H
39 46anti-parallel
Strand 3
H
51 54anti-parallel
Strand 4
H
104 108anti-parallel
Strand 5
H
81 91parallel
Strand 6
H
64 68anti-parallel
Strand 7
H
30 35anti-parallel
Strand 8
H
39 46anti-parallel
Strand 9
H
30 35anti-parallel
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There are 2 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
60 64first strand
Strand 2
L
67 71anti-parallel
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There are 2 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
76 77first strand
Strand 2
L
83 84anti-parallel
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There are 2 strands in LC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
101 103first strand
Strand 2
L
111 113anti-parallel
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There are 2 strands in LD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
118 120first strand
Strand 2
L
127 129anti-parallel
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There are 3 strands in TA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
10 17first strand
Strand 2
T
20 26anti-parallel
Strand 3
T
56 58anti-parallel
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There are 4 strands in TB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
46 52first strand
Strand 2
T
34 40anti-parallel
Strand 3
T
71 77anti-parallel
Strand 4
T
93 96anti-parallel
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There are 3 strands in TC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
113 119first strand
Strand 2
T
122 127anti-parallel
Strand 3
T
174 178anti-parallel
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There are 2 strands in TD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
131 136first strand
Strand 2
T
139 142anti-parallel
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There are 4 strands in TE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
166 170first strand
Strand 2
T
152 158anti-parallel
Strand 3
T
186 192anti-parallel
Strand 4
T
208 209anti-parallel
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