Analysis of interatomic Contacts of Structural Units in PDB entry:
1W6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1W6J entry

There is 1 chain in PDB entry 1W6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
CYS 6PRO 732
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 1W6J. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
21 23Right-handed 310
Helix 2
2
A
49 57Right-handed alpha
Helix 3
3
A
72 86Right-handed alpha
Helix 4
4
A
103 115Right-handed alpha
Helix 5
5
A
122 135Right-handed alpha
Helix 6
6
A
150 164Right-handed alpha
Helix 7
7
A
170 183Right-handed alpha
Helix 8
8
A
185 189Right-handed 310
Helix 9
9
A
190 200Right-handed alpha
Helix 10
10
A
204 208Right-handed 310
Helix 11
11
A
212 218Right-handed 310
Helix 12
12
A
225 229Right-handed 310
Helix 13
13
A
230 246Right-handed alpha
Helix 14
14
A
253 263Right-handed alpha
Helix 15
15
A
267 271Right-handed 310
Helix 16
16
A
272 277Right-handed 310
Helix 17
17
A
281 285Right-handed 310
Helix 18
18
A
290 306Right-handed alpha
Helix 19
19
A
308 331Right-handed alpha
Helix 20
20
A
336 352Right-handed alpha
Helix 21
21
A
355 364Right-handed alpha
Helix 22
22
A
365 367Right-handed 310
Helix 23
23
A
384 399Right-handed alpha
Helix 24
24
A
400 404Right-handed 310
Helix 25
25
A
404 406Right-handed 310
Helix 26
26
A
407 422Right-handed alpha
Helix 27
27
A
429 434Right-handed 310
Helix 28
28
A
453 471Right-handed alpha
Helix 29
29
A
479 492Right-handed alpha
Helix 30
30
A
509 516Right-handed 310
Helix 31
31
A
530 548Right-handed alpha
Helix 32
32
A
552 571Right-handed alpha
Helix 33
33
A
584 599Right-handed alpha
Helix 34
34
A
609 621Right-handed alpha
Helix 35
35
A
633 639Right-handed alpha
Helix 36
36
A
648 662Right-handed alpha
Helix 37
37
A
666 681Right-handed alpha
Helix 38
38
A
706 723Right-handed alpha
Helix 39
39
A
726 730Right-handed 310
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There are 3 sheets in PDB entry 1W6J. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
25 30first strand
Strand 2
A
33 38anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
369 372first strand
Strand 2
A
375 378anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
694 696first strand
Strand 2
A
700 702anti-parallel
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