Analysis of interatomic Contacts of Structural Units in PDB entry:
1W6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1W6M entry

There are 3 chains in PDB entry 1W6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1001GLU 1015
A
 LEU 1017ASP 1134
B
 ALA 2001ASP 2134
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 1W6M

There are 3 sheets in PDB entry 1W6M. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 11 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1067 1068first strand
Strand 2
A
1054 1064anti-parallel
Strand 3
A
1040 1051anti-parallel
Strand 4
A
1030 1037anti-parallel
Strand 5
A
1117 1124anti-parallel
Strand 6
A
1005 1011anti-parallel
Strand 7
B
2005 2007anti-parallel
Strand 8
B
2119 2122anti-parallel
Strand 9
B
2032 2037anti-parallel
Strand 10
B
2040 2051anti-parallel
Strand 11
B
2054 2064anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1067 1068first strand
Strand 2
A
1054 1064anti-parallel
Strand 3
A
1072 1073anti-parallel
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There are 10 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1105 1109first strand
Strand 2
A
1095 1099anti-parallel
Strand 3
A
1083 1091anti-parallel
Strand 4
A
1016 1023anti-parallel
Strand 5
A
1126 1133anti-parallel
Strand 6
B
2126 2133anti-parallel
Strand 7
B
2017 2023anti-parallel
Strand 8
B
2083 2091anti-parallel
Strand 9
B
2095 2099anti-parallel
Strand 10
B
2105 2109anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il