Analysis of interatomic Contacts of Structural Units in PDB entry:
1WKY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WKY entry

There is 1 chain in PDB entry 1WKY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 27GLU 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1WKY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 65Right-handed 310
Helix 2
2
A
66 76Right-handed alpha
Helix 3
3
A
96 110Right-handed alpha
Helix 4
4
A
126 140Right-handed alpha
Helix 5
5
A
141 144Right-handed 310
Helix 6
6
A
164 182Right-handed alpha
Helix 7
7
A
199 212Right-handed alpha
Helix 8
8
A
231 244Right-handed alpha
Helix 9
9
A
264 275Right-handed alpha
Helix 10
10
A
288 295Right-handed 310
Helix 11
11
A
306 315Right-handed alpha
Helix 12
12
A
318 323Right-handed alpha
Helix 13
13
A
459 461Right-handed 310
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There are 7 sheets in PDB entry 1WKY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
42 44anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
81 86parallel
Strand 3
A
113 118parallel
Strand 4
A
151 154parallel
Strand 5
A
188 191parallel
Strand 6
A
218 224parallel
Strand 7
A
249 254parallel
Strand 8
A
278 281parallel
Strand 9
A
54 58parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
261 262anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 344first strand
Strand 2
A
478 490anti-parallel
Strand 3
A
375 382anti-parallel
Strand 4
A
360 365anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 344first strand
Strand 2
A
478 490anti-parallel
Strand 3
A
403 410anti-parallel
Strand 4
A
448 453anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 356first strand
Strand 2
A
387 396anti-parallel
Strand 3
A
463 472anti-parallel
Strand 4
A
420 428anti-parallel
Strand 5
A
433 436anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 356first strand
Strand 2
A
387 396anti-parallel
Strand 3
A
463 472anti-parallel
Strand 4
A
420 428anti-parallel
Strand 5
A
440 442anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il