Analysis of interatomic Contacts of Structural Units in PDB entry:
1WYW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WYW entry

There are 2 chains in PDB entry 1WYW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 117GLU 332
B
 GLY 19GLY 97
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1WYW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
118 122Right-handed 310
Helix 2
2
A
142 149Right-handed alpha
Helix 3
3
A
158 166Right-handed alpha
Helix 4
4
A
174 179Right-handed 310
Helix 5
5
A
180 186Right-handed alpha
Helix 6
6
A
199 203Right-handed 310
Helix 7
7
A
204 223Right-handed alpha
Helix 8
8
A
231 242Right-handed alpha
Helix 9
9
A
281 284Right-handed 310
Helix 10
10
A
285 300Right-handed alpha
Helix 11
11
A
316 330Right-handed alpha
Helix 12
12
B
44 56Right-handed alpha
Helix 13
13
B
58 60Right-handed 310
Helix 14
14
B
76 81Right-handed alpha
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There are 2 sheets in PDB entry 1WYW. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 191first strand
Strand 2
A
134 138parallel
Strand 3
A
226 230parallel
Strand 4
A
265 269parallel
Strand 5
A
253 254anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 314first strand
Strand 2
B
33 39anti-parallel
Strand 3
B
21 27anti-parallel
Strand 4
B
87 92parallel
Strand 5
B
62 66anti-parallel
Strand 6
B
69 70anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il