Analysis of interatomic Contacts of Structural Units in PDB entry:
1XJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1XJD entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 1XJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 377ASN 537
A
 PHE 539PHE 694
A
 PHE 696PHE 696
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1XJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
413 419Right-handed alpha
Helix 2
2
A
421 436Right-handed alpha
Helix 3
3
A
465 474Right-handed alpha
Helix 4
4
A
477 498Right-handed alpha
Helix 5
5
A
506 508Right-handed 310
Helix 6
6
A
542 546Right-handed 310
Helix 7
7
A
547 552Right-handed alpha
Helix 8
8
A
558 575Right-handed alpha
Helix 9
9
A
583 594Right-handed alpha
Helix 10
10
A
603 614Right-handed alpha
Helix 11
11
A
617 621Right-handed 310
Helix 12
12
A
627 635Right-handed 310
Helix 13
13
A
638 644Right-handed alpha
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There are 2 sheets in PDB entry 1XJD. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 388first strand
Strand 2
A
393 399anti-parallel
Strand 3
A
405 412anti-parallel
Strand 4
A
453 459anti-parallel
Strand 5
A
444 449anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 512first strand
Strand 2
A
518 520anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il