Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y1J entry

There are 2 chains in PDB entry 1Y1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
LEU 86MET 335
X
HIS 337PRO 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 1Y1J. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
X
108 112Right-handed 310
Helix 2
2
X
132 144Right-handed alpha
Helix 3
3
X
147 153Right-handed alpha
Helix 4
4
X
160 162Right-handed 310
Helix 5
5
X
210 221Right-handed alpha
Helix 6
6
X
227 237Right-handed alpha
Helix 7
7
X
251 255Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 1Y1J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
91 94first strand
Strand 2
X
124 127anti-parallel
Strand 3
X
366 367anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
97 101first strand
Strand 2
X
117 121anti-parallel
Strand 3
X
315 316parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
154 158first strand
Strand 2
X
180 184anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
263 264first strand
Strand 2
X
268 269anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
350 352first strand
Strand 2
X
327 330anti-parallel
Strand 3
X
299 305anti-parallel
Strand 4
X
361 362parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il