Analysis of interatomic Contacts of Structural Units in PDB entry:
1YFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YFR entry

There are 2 chains in PDB entry 1YFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LEU 457
B
 SER 1LEU 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1YFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 18Right-handed alpha
Helix 2
2
A
46 51Right-handed alpha
Helix 3
3
A
102 117Right-handed alpha
Helix 4
4
A
133 142Right-handed alpha
Helix 5
5
A
147 149Right-handed 310
Helix 6
6
A
155 159Right-handed alpha
Helix 7
7
A
222 230Right-handed alpha
Helix 8
8
A
234 238Right-handed 310
Helix 9
9
A
241 253Right-handed alpha
Helix 10
10
A
259 282Right-handed alpha
Helix 11
11
A
290 310Right-handed alpha
Helix 12
12
A
315 328Right-handed alpha
Helix 13
13
A
332 373Right-handed alpha
Helix 14
14
A
379 388Right-handed alpha
Helix 15
15
A
393 403Right-handed alpha
Helix 16
16
A
409 422Right-handed alpha
Helix 17
17
A
444 448Right-handed 310
Helix 18
18
B
3 13Right-handed alpha
Helix 19
19
B
43 45Right-handed 310
Helix 20
20
B
46 52Right-handed alpha
Helix 21
21
B
71 75Right-handed 310
Helix 22
22
B
76 80Right-handed 310
Helix 23
23
B
102 116Right-handed alpha
Helix 24
24
B
121 123Right-handed 310
Helix 25
25
B
133 142Right-handed alpha
Helix 26
26
B
155 159Right-handed alpha
Helix 27
27
B
184 187Right-handed 310
Helix 28
28
B
222 230Right-handed alpha
Helix 29
29
B
241 250Right-handed alpha
Helix 30
30
B
260 281Right-handed alpha
Helix 31
31
B
291 309Right-handed alpha
Helix 32
32
B
315 327Right-handed alpha
Helix 33
33
B
331 335Right-handed 310
Helix 34
34
B
337 371Right-handed alpha
Helix 35
35
B
379 389Right-handed alpha
Helix 36
36
B
393 402Right-handed alpha
Helix 37
37
B
413 419Right-handed alpha
Helix 38
38
B
420 422Right-handed 310
Helix 39
39
B
444 449Right-handed alpha
Helix 40
40
B
450 452Right-handed 310
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There are 7 sheets in PDB entry 1YFR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
60 68parallel
Strand 3
A
89 98anti-parallel
Strand 4
A
208 218anti-parallel
Strand 5
A
189 202anti-parallel
Strand 6
A
167 178anti-parallel
Strand 7
A
160 162anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
125 130parallel
Strand 3
A
167 178anti-parallel
Strand 4
A
189 202anti-parallel
Strand 5
A
208 218anti-parallel
Strand 6
A
89 98anti-parallel
Strand 7
A
220 221anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
74 75anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 378first strand
Strand 2
A
407 408parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 68first strand
Strand 2
B
89 97anti-parallel
Strand 3
B
208 221anti-parallel
Strand 4
B
189 202anti-parallel
Strand 5
B
167 178anti-parallel
Strand 6
B
125 126anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 68first strand
Strand 2
B
89 97anti-parallel
Strand 3
B
208 221anti-parallel
Strand 4
B
189 202anti-parallel
Strand 5
B
167 178anti-parallel
Strand 6
B
160 161anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 378first strand
Strand 2
B
407 408parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il