Analysis of interatomic Contacts of Structural Units in PDB entry:
1YGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YGE entry

There is 1 chain in PDB entry 1YGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 839
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 1YGE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 19Right-handed 310
Helix 2
2
A
24 26Right-handed 310
Helix 3
3
A
32 35Right-handed 310
Helix 4
4
A
89 91Right-handed 310
Helix 5
5
A
134 136Right-handed 310
Helix 6
6
A
151 153Right-handed 310
Helix 7
7
A
156 170Right-handed 310
Helix 8
8
A
199 201Right-handed 310
Helix 9
9
A
242 244Right-handed 310
Helix 10
10
A
251 253Right-handed 310
Helix 11
11
A
255 264Right-handed 310
Helix 12
12
A
266 275Right-handed alpha
Helix 13
13
A
286 293Right-handed alpha
Helix 14
14
A
301 307Right-handed alpha
Helix 15
15
A
313 316Right-handed 310
Helix 16
16
A
331 333Right-handed 310
Helix 17
17
A
339 341Right-handed 310
Helix 18
18
A
343 352Right-handed alpha
Helix 19
19
A
373 376Right-handed alpha
Helix 20
20
A
385 387Right-handed 310
Helix 21
21
A
395 400Right-handed alpha
Helix 22
22
A
410 421Right-handed alpha
Helix 23
23
A
473 496Right-handed alpha
Helix 24
24
A
504 517Right-handed alpha
Helix 25
25
A
523 532Right-handed alpha
Helix 26
26
A
535 545Right-handed alpha
Helix 27
27
A
552 556Right-handed alpha
Helix 28
28
A
560 573Right-handed 310
Helix 29
29
A
576 579Right-handed 310
Helix 30
30
A
581 587Right-handed alpha
Helix 31
31
A
609 631Right-handed alpha
Helix 32
32
A
636 640Right-handed alpha
Helix 33
33
A
643 654Right-handed alpha
Helix 34
34
A
658 660Right-handed 310
Helix 35
35
A
672 686Right-handed alpha
Helix 36
36
A
688 694Right-handed alpha
Helix 37
37
A
697 701Right-handed alpha
Helix 38
38
A
721 728Right-handed alpha
Helix 39
39
A
730 737Right-handed alpha
Helix 40
40
A
741 754Right-handed alpha
Helix 41
41
A
776 801Right-handed alpha
Helix 42
42
A
803 809Right-handed 310
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There are 5 sheets in PDB entry 1YGE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
79 86anti-parallel
Strand 3
A
7 16anti-parallel
Strand 4
A
107 114anti-parallel
Strand 5
A
129 131anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
94 101anti-parallel
Strand 3
A
40 46anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
123 126anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 408first strand
Strand 2
A
430 437anti-parallel
Strand 3
A
443 451anti-parallel
Strand 4
A
465 467anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 593first strand
Strand 2
A
601 603anti-parallel
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