Analysis of interatomic Contacts of Structural Units in PDB entry:
1YOV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YOV entry

There are 4 chains in PDB entry 1YOV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6LEU 534
B
 ASP 12LYS 437
C
 LYS 9LEU 534
D
 HIS 19PHE 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 1YOV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 13Right-handed alpha
Helix 2
2
A
13 31Right-handed alpha
Helix 3
3
A
39 51Right-handed alpha
Helix 4
4
A
66 73Right-handed alpha
Helix 5
5
A
77 81Right-handed 310
Helix 6
6
A
84 95Right-handed alpha
Helix 7
7
A
108 115Right-handed alpha
Helix 8
8
A
116 123Right-handed 310
Helix 9
9
A
132 147Right-handed alpha
Helix 10
10
A
189 198Right-handed alpha
Helix 11
11
A
205 210Right-handed alpha
Helix 12
12
A
213 229Right-handed alpha
Helix 13
13
A
238 249Right-handed alpha
Helix 14
14
A
262 276Right-handed alpha
Helix 15
15
A
282 290Right-handed alpha
Helix 16
16
A
291 296Right-handed alpha
Helix 17
17
A
302 317Right-handed alpha
Helix 18
18
A
335 367Right-handed alpha
Helix 19
19
A
376 386Right-handed alpha
Helix 20
20
A
397 403Right-handed alpha
Helix 21
21
A
408 416Right-handed alpha
Helix 22
22
A
422 439Right-handed alpha
Helix 23
23
A
449 468Right-handed alpha
Helix 24
24
A
475 485Right-handed alpha
Helix 25
25
A
490 511Right-handed alpha
Helix 26
26
B
17 26Right-handed alpha
Helix 27
27
B
40 49Right-handed alpha
Helix 28
28
B
59 69Right-handed alpha
Helix 29
29
B
84 90Right-handed 310
Helix 30
30
B
95 99Right-handed 310
Helix 31
31
B
102 115Right-handed alpha
Helix 32
32
B
126 130Right-handed 310
Helix 33
33
B
131 136Right-handed alpha
Helix 34
34
B
147 161Right-handed alpha
Helix 35
35
B
171 174Right-handed 310
Helix 36
36
B
199 207Right-handed 310
Helix 37
37
B
214 221Right-handed alpha
Helix 38
38
B
224 235Right-handed alpha
Helix 39
39
B
235 240Right-handed alpha
Helix 40
40
B
253 271Right-handed alpha
Helix 41
41
B
277 286Right-handed alpha
Helix 42
42
B
292 313Right-handed alpha
Helix 43
43
B
363 368Right-handed alpha
Helix 44
44
B
401 405Right-handed 310
Helix 45
45
C
13 31Right-handed alpha
Helix 46
46
C
39 51Right-handed alpha
Helix 47
47
C
66 73Right-handed alpha
Helix 48
48
C
84 97Right-handed alpha
Helix 49
49
C
108 116Right-handed alpha
Helix 50
50
C
117 123Right-handed 310
Helix 51
51
C
132 146Right-handed alpha
Helix 52
52
C
189 197Right-handed alpha
Helix 53
53
C
200 204Right-handed 310
Helix 54
54
C
205 210Right-handed alpha
Helix 55
55
C
213 226Right-handed alpha
Helix 56
56
C
236 249Right-handed alpha
Helix 57
57
C
262 276Right-handed alpha
Helix 58
58
C
282 290Right-handed alpha
Helix 59
59
C
291 296Right-handed alpha
Helix 60
60
C
302 317Right-handed alpha
Helix 61
61
C
335 369Right-handed alpha
Helix 62
62
C
377 384Right-handed alpha
Helix 63
63
C
386 390Right-handed 310
Helix 64
64
C
397 403Right-handed alpha
Helix 65
65
C
408 416Right-handed alpha
Helix 66
66
C
422 440Right-handed alpha
Helix 67
67
C
449 469Right-handed alpha
Helix 68
68
C
476 485Right-handed alpha
Helix 69
69
C
490 511Right-handed alpha
Helix 70
70
D
42 47Right-handed alpha
Helix 71
71
D
57 69Right-handed alpha
Helix 72
72
D
84 88Right-handed 310
Helix 73
73
D
102 115Right-handed alpha
Helix 74
74
D
126 130Right-handed 310
Helix 75
75
D
134 138Right-handed 310
Helix 76
76
D
147 161Right-handed alpha
Helix 77
77
D
171 174Right-handed 310
Helix 78
78
D
200 204Right-handed 310
Helix 79
79
D
214 220Right-handed alpha
Helix 80
80
D
224 233Right-handed alpha
Helix 81
81
D
236 241Right-handed alpha
Helix 82
82
D
256 265Right-handed alpha
Helix 83
83
D
266 271Right-handed alpha
Helix 84
84
D
277 286Right-handed alpha
Helix 85
85
D
292 313Right-handed alpha
Helix 86
86
D
363 371Right-handed alpha
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There are 11 sheets in PDB entry 1YOV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
56 60parallel
Strand 3
A
32 35parallel
Strand 4
A
125 129parallel
Strand 5
A
150 156parallel
Strand 6
A
159 165anti-parallel
Strand 7
A
519 523anti-parallel
Strand 8
A
528 532anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
391 393anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 123first strand
Strand 2
B
75 78parallel
Strand 3
B
51 54parallel
Strand 4
B
140 143parallel
Strand 5
B
177 183parallel
Strand 6
B
186 192anti-parallel
Strand 7
B
321 325anti-parallel
Strand 8
B
331 335anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 165first strand
Strand 2
B
168 169anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 352first strand
Strand 2
B
436 437parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 382first strand
Strand 2
B
391 392anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 103first strand
Strand 2
C
56 58parallel
Strand 3
C
32 35parallel
Strand 4
C
126 129parallel
Strand 5
C
150 156parallel
Strand 6
C
159 165anti-parallel
Strand 7
C
520 523anti-parallel
Strand 8
C
528 531anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 171first strand
Strand 2
C
391 393anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
119 123first strand
Strand 2
D
74 78parallel
Strand 3
D
51 54parallel
Strand 4
D
140 143parallel
Strand 5
D
177 183parallel
Strand 6
D
186 192anti-parallel
Strand 7
D
322 325anti-parallel
Strand 8
D
331 334anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
164 165first strand
Strand 2
D
168 169anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
380 381first strand
Strand 2
D
393 394anti-parallel
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