Analysis of interatomic Contacts of Structural Units in PDB entry:
1YZE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YZE entry

There are 3 chains in PDB entry 1YZE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
TRP 65VAL 203
B
SER 67ALA 204
C
SER 67ALA 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 1YZE


There are 6 sheets in PDB entry 1YZE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
68 75first strand
Strand 2
A
189 197anti-parallel
Strand 3
A
131 140anti-parallel
Strand 4
A
151 159anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
90 92first strand
Strand 2
A
95 102anti-parallel
Strand 3
A
116 121anti-parallel
Strand 4
A
164 167anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
68 74first strand
Strand 2
B
190 197anti-parallel
Strand 3
B
131 140anti-parallel
Strand 4
B
151 159anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
90 92first strand
Strand 2
B
95 102anti-parallel
Strand 3
B
116 121anti-parallel
Strand 4
B
164 167anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
68 73first strand
Strand 2
C
191 197anti-parallel
Strand 3
C
131 140anti-parallel
Strand 4
C
151 159anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
90 92first strand
Strand 2
C
95 101anti-parallel
Strand 3
C
117 121anti-parallel
Strand 4
C
164 167anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il