Analysis of interatomic Contacts of Structural Units in PDB entry:
1ZAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ZAF entry

There are 4 chains in PDB entry 1ZAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 263LEU 500
B
LEU 263LEU 500
C
SER 601THR 613
D
SER 601THR 613
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 1ZAF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
264 276Right-handed alpha
Helix 2
2
A
290 315Right-handed alpha
Helix 3
3
A
318 322Right-handed 310
Helix 4
4
A
323 348Right-handed alpha
Helix 5
5
A
372 391Right-handed alpha
Helix 6
6
A
393 407Right-handed alpha
Helix 7
7
A
421 444Right-handed alpha
Helix 8
8
A
447 461Right-handed alpha
Helix 9
9
A
461 482Right-handed alpha
Helix 10
10
A
488 500Right-handed alpha
Helix 11
11
B
264 276Right-handed alpha
Helix 12
12
B
290 315Right-handed alpha
Helix 13
13
B
318 322Right-handed 310
Helix 14
14
B
323 348Right-handed alpha
Helix 15
15
B
365 369Right-handed 310
Helix 16
16
B
372 390Right-handed alpha
Helix 17
17
B
393 408Right-handed alpha
Helix 18
18
B
422 443Right-handed alpha
Helix 19
19
B
447 460Right-handed alpha
Helix 20
20
B
461 482Right-handed alpha
Helix 21
21
B
488 497Right-handed alpha
Helix 22
22
C
604 611Right-handed alpha
Helix 23
23
D
604 612Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1ZAF. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
354 357first strand
Strand 2
A
360 362anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
353 357first strand
Strand 2
B
360 363anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il