Analysis of interatomic Contacts of Structural Units in PDB entry:
2AAV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2AAV entry

There is 1 chain in PDB entry 2AAV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY -4ASP 1956
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 2AAV. Click on helix number for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1872 1875Right-handed 310
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There are 3 sheets in PDB entry 2AAV. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1877 1878first strand
Strand 2
A
1948 1952parallel
Strand 3
A
1930 1938anti-parallel
Strand 4
A
1898 1903anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1877 1878first strand
Strand 2
A
1948 1952parallel
Strand 3
A
1930 1938anti-parallel
Strand 4
A
1941 1942anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1884 1886first strand
Strand 2
A
1922 1924anti-parallel
Strand 3
A
1911 1912anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il