Analysis of interatomic Contacts of Structural Units in PDB entry:
2ASJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ASJ entry

There are 6 chains in PDB entry 2ASJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
G 801 A 812
E
C 907 C 919
H
G 1801 A 1812
J
C 1907 C 1919
A
GLY 1ILE 341
B
GLY 1001ILE 1341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 2ASJ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
10 20Right-handed alpha
Helix 2
2
A
21 24Right-handed 310
Helix 3
3
A
47 52Right-handed alpha
Helix 4
4
A
60 68Right-handed alpha
Helix 5
5
A
77 93Right-handed alpha
Helix 6
6
A
117 136Right-handed alpha
Helix 7
7
A
147 159Right-handed alpha
Helix 8
8
A
167 178Right-handed alpha
Helix 9
9
A
179 183Right-handed 310
Helix 10
10
A
187 196Right-handed alpha
Helix 11
11
A
201 208Right-handed 310
Helix 12
12
A
209 218Right-handed alpha
Helix 13
13
A
218 231Right-handed alpha
Helix 14
14
A
257 277Right-handed alpha
Helix 15
15
A
307 326Right-handed alpha
Helix 16
16
B
1010 1020Right-handed alpha
Helix 17
17
B
1021 1024Right-handed 310
Helix 18
18
B
1047 1052Right-handed alpha
Helix 19
19
B
1060 1068Right-handed alpha
Helix 20
20
B
1077 1093Right-handed alpha
Helix 21
21
B
1117 1137Right-handed alpha
Helix 22
22
B
1147 1159Right-handed alpha
Helix 23
23
B
1167 1178Right-handed alpha
Helix 24
24
B
1179 1183Right-handed 310
Helix 25
25
B
1187 1196Right-handed alpha
Helix 26
26
B
1201 1208Right-handed 310
Helix 27
27
B
1209 1218Right-handed alpha
Helix 28
28
B
1218 1229Right-handed alpha
Helix 29
29
B
1257 1277Right-handed alpha
Helix 30
30
B
1307 1326Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2ASJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
99 103first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
3 8anti-parallel
Strand 4
A
140 145anti-parallel
Strand 5
A
163 165parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
41 46first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
72 75parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
244 255first strand
Strand 2
A
330 338anti-parallel
Strand 3
A
283 290anti-parallel
Strand 4
A
295 301anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1099 1103first strand
Strand 2
B
1106 1110anti-parallel
Strand 3
B
1003 1008anti-parallel
Strand 4
B
1140 1145anti-parallel
Strand 5
B
1163 1165parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1041 1046first strand
Strand 2
B
1028 1033anti-parallel
Strand 3
B
1072 1075parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1244 1255first strand
Strand 2
B
1330 1338anti-parallel
Strand 3
B
1283 1290anti-parallel
Strand 4
B
1295 1301anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il