Analysis of interatomic Contacts of Structural Units in PDB entry:
2BDI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BDI entry

There are 16 chains in PDB entry 2BDI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ILE 16ALA 244
B
ILE 16ALA 244
C
ILE 16ALA 244
D
ILE 16ALA 244
E
ILE 16ALA 244
F
ILE 16ALA 244
G
ILE 16ALA 244
H
ILE 16ALA 244
I
ILE 16ALA 244
J
ILE 16ALA 244
K
ILE 16ALA 244
L
ILE 16ALA 244
M
ILE 16ALA 244
N
ILE 16ALA 244
O
ILE 16ALA 244
P
ILE 16ALA 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 2BDI. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
55 59Right-handed 310
Helix 2
2
A
74 77Right-handed 310
Helix 3
3
A
164 173Right-handed alpha
Helix 4
4
A
234 243Right-handed alpha
Helix 5
5
B
55 59Right-handed 310
Helix 6
6
B
74 77Right-handed 310
Helix 7
7
B
164 173Right-handed alpha
Helix 8
8
B
234 243Right-handed alpha
Helix 9
9
C
55 59Right-handed 310
Helix 10
10
C
74 77Right-handed 310
Helix 11
11
C
164 173Right-handed alpha
Helix 12
12
C
234 243Right-handed alpha
Helix 13
13
D
55 59Right-handed 310
Helix 14
14
D
74 77Right-handed 310
Helix 15
15
D
164 173Right-handed alpha
Helix 16
16
D
234 243Right-handed alpha
Helix 17
17
E
55 59Right-handed 310
Helix 18
18
E
74 77Right-handed 310
Helix 19
19
E
164 173Right-handed alpha
Helix 20
20
E
234 243Right-handed alpha
Helix 21
21
F
55 59Right-handed 310
Helix 22
22
F
74 77Right-handed 310
Helix 23
23
F
164 172Right-handed alpha
Helix 24
24
F
234 243Right-handed alpha
Helix 25
25
G
55 59Right-handed 310
Helix 26
26
G
74 77Right-handed 310
Helix 27
27
G
164 173Right-handed alpha
Helix 28
28
G
234 243Right-handed alpha
Helix 29
29
H
55 59Right-handed 310
Helix 30
30
H
74 77Right-handed 310
Helix 31
31
H
164 173Right-handed alpha
Helix 32
32
H
234 243Right-handed alpha
Helix 33
33
I
55 59Right-handed 310
Helix 34
34
I
74 77Right-handed 310
Helix 35
35
I
164 173Right-handed alpha
Helix 36
36
I
234 243Right-handed alpha
Helix 37
37
J
55 59Right-handed 310
Helix 38
38
J
74 77Right-handed 310
Helix 39
39
J
164 173Right-handed alpha
Helix 40
40
J
234 243Right-handed alpha
Helix 41
41
K
55 59Right-handed 310
Helix 42
42
K
74 77Right-handed 310
Helix 43
43
K
164 173Right-handed alpha
Helix 44
44
K
234 243Right-handed alpha
Helix 45
45
L
55 59Right-handed 310
Helix 46
46
L
74 77Right-handed 310
Helix 47
47
L
164 173Right-handed alpha
Helix 48
48
L
234 243Right-handed alpha
Helix 49
49
M
55 59Right-handed 310
Helix 50
50
M
74 77Right-handed 310
Helix 51
51
M
164 173Right-handed alpha
Helix 52
52
M
234 243Right-handed alpha
Helix 53
53
N
55 59Right-handed 310
Helix 54
54
N
74 77Right-handed 310
Helix 55
55
N
164 173Right-handed alpha
Helix 56
56
N
234 243Right-handed alpha
Helix 57
57
O
55 59Right-handed 310
Helix 58
58
O
74 77Right-handed 310
Helix 59
59
O
164 173Right-handed alpha
Helix 60
60
O
234 243Right-handed alpha
Helix 61
61
P
55 59Right-handed 310
Helix 62
62
P
74 77Right-handed 310
Helix 63
63
P
164 173Right-handed alpha
Helix 64
64
P
234 243Right-handed alpha
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There are 32 sheets in PDB entry 2BDI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
20 21first strand
Strand 2
A
156 161anti-parallel
Strand 3
A
135 140anti-parallel
Strand 4
A
198 201anti-parallel
Strand 5
A
208 215anti-parallel
Strand 6
A
226 230anti-parallel
Strand 7
A
180 183anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
81 82first strand
Strand 2
A
64 67anti-parallel
Strand 3
A
30 34anti-parallel
Strand 4
A
40 48anti-parallel
Strand 5
A
51 54anti-parallel
Strand 6
A
104 108anti-parallel
Strand 7
A
85 90anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
20 21first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
135 140anti-parallel
Strand 4
B
198 201anti-parallel
Strand 5
B
208 215anti-parallel
Strand 6
B
226 230anti-parallel
Strand 7
B
180 183anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
81 82first strand
Strand 2
B
64 67anti-parallel
Strand 3
B
30 34anti-parallel
Strand 4
B
40 48anti-parallel
Strand 5
B
51 54anti-parallel
Strand 6
B
104 108anti-parallel
Strand 7
B
85 90anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
20 21first strand
Strand 2
C
156 161anti-parallel
Strand 3
C
135 140anti-parallel
Strand 4
C
198 201anti-parallel
Strand 5
C
208 215anti-parallel
Strand 6
C
226 230anti-parallel
Strand 7
C
180 183anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
81 82first strand
Strand 2
C
64 67anti-parallel
Strand 3
C
30 34anti-parallel
Strand 4
C
40 48anti-parallel
Strand 5
C
51 54anti-parallel
Strand 6
C
104 108anti-parallel
Strand 7
C
85 90anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
20 21first strand
Strand 2
D
156 161anti-parallel
Strand 3
D
135 140anti-parallel
Strand 4
D
198 201anti-parallel
Strand 5
D
208 215anti-parallel
Strand 6
D
226 230anti-parallel
Strand 7
D
180 183anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
81 82first strand
Strand 2
D
64 67anti-parallel
Strand 3
D
30 34anti-parallel
Strand 4
D
40 48anti-parallel
Strand 5
D
51 54anti-parallel
Strand 6
D
104 108anti-parallel
Strand 7
D
85 90anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
20 21first strand
Strand 2
E
156 161anti-parallel
Strand 3
E
135 140anti-parallel
Strand 4
E
198 201anti-parallel
Strand 5
E
208 215anti-parallel
Strand 6
E
226 230anti-parallel
Strand 7
E
180 183anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
81 82first strand
Strand 2
E
64 67anti-parallel
Strand 3
E
30 34anti-parallel
Strand 4
E
40 48anti-parallel
Strand 5
E
51 54anti-parallel
Strand 6
E
104 108anti-parallel
Strand 7
E
85 90anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
20 21first strand
Strand 2
F
156 161anti-parallel
Strand 3
F
135 140anti-parallel
Strand 4
F
198 201anti-parallel
Strand 5
F
208 215anti-parallel
Strand 6
F
226 230anti-parallel
Strand 7
F
180 183anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
81 82first strand
Strand 2
F
64 67anti-parallel
Strand 3
F
30 34anti-parallel
Strand 4
F
40 48anti-parallel
Strand 5
F
51 54anti-parallel
Strand 6
F
104 108anti-parallel
Strand 7
F
85 90anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
20 21first strand
Strand 2
G
156 161anti-parallel
Strand 3
G
135 140anti-parallel
Strand 4
G
198 200anti-parallel
Strand 5
G
209 215anti-parallel
Strand 6
G
226 230anti-parallel
Strand 7
G
180 183anti-parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
81 82first strand
Strand 2
G
64 67anti-parallel
Strand 3
G
30 34anti-parallel
Strand 4
G
40 48anti-parallel
Strand 5
G
51 54anti-parallel
Strand 6
G
104 108anti-parallel
Strand 7
G
85 90anti-parallel
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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
20 21first strand
Strand 2
H
156 161anti-parallel
Strand 3
H
135 140anti-parallel
Strand 4
H
198 201anti-parallel
Strand 5
H
208 215anti-parallel
Strand 6
H
226 230anti-parallel
Strand 7
H
180 183anti-parallel
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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
81 82first strand
Strand 2
H
64 67anti-parallel
Strand 3
H
30 34anti-parallel
Strand 4
H
40 48anti-parallel
Strand 5
H
51 54anti-parallel
Strand 6
H
104 108anti-parallel
Strand 7
H
85 90anti-parallel
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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
20 21first strand
Strand 2
I
156 161anti-parallel
Strand 3
I
135 140anti-parallel
Strand 4
I
198 201anti-parallel
Strand 5
I
208 215anti-parallel
Strand 6
I
226 230anti-parallel
Strand 7
I
180 183anti-parallel
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There are 7 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
81 82first strand
Strand 2
I
64 67anti-parallel
Strand 3
I
30 34anti-parallel
Strand 4
I
40 48anti-parallel
Strand 5
I
51 54anti-parallel
Strand 6
I
104 108anti-parallel
Strand 7
I
85 90anti-parallel
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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
20 21first strand
Strand 2
J
156 161anti-parallel
Strand 3
J
135 140anti-parallel
Strand 4
J
198 201anti-parallel
Strand 5
J
208 215anti-parallel
Strand 6
J
226 230anti-parallel
Strand 7
J
180 183anti-parallel
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There are 7 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
81 82first strand
Strand 2
J
64 67anti-parallel
Strand 3
J
30 34anti-parallel
Strand 4
J
40 48anti-parallel
Strand 5
J
51 54anti-parallel
Strand 6
J
104 108anti-parallel
Strand 7
J
85 90anti-parallel
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There are 7 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
20 21first strand
Strand 2
K
156 161anti-parallel
Strand 3
K
135 140anti-parallel
Strand 4
K
198 200anti-parallel
Strand 5
K
209 215anti-parallel
Strand 6
K
226 230anti-parallel
Strand 7
K
180 183anti-parallel
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There are 7 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
81 82first strand
Strand 2
K
64 67anti-parallel
Strand 3
K
30 34anti-parallel
Strand 4
K
40 48anti-parallel
Strand 5
K
51 54anti-parallel
Strand 6
K
104 108anti-parallel
Strand 7
K
85 90anti-parallel
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There are 7 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
20 21first strand
Strand 2
L
156 161anti-parallel
Strand 3
L
135 140anti-parallel
Strand 4
L
198 201anti-parallel
Strand 5
L
208 215anti-parallel
Strand 6
L
226 230anti-parallel
Strand 7
L
180 183anti-parallel
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There are 7 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
30 34first strand
Strand 2
L
40 48anti-parallel
Strand 3
L
51 54anti-parallel
Strand 4
L
104 108anti-parallel
Strand 5
L
81 90anti-parallel
Strand 6
L
63 67anti-parallel
Strand 7
L
30 34anti-parallel
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There are 7 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
20 21first strand
Strand 2
M
156 161anti-parallel
Strand 3
M
135 140anti-parallel
Strand 4
M
198 201anti-parallel
Strand 5
M
208 215anti-parallel
Strand 6
M
226 230anti-parallel
Strand 7
M
180 183anti-parallel
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There are 7 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
81 82first strand
Strand 2
M
64 67anti-parallel
Strand 3
M
30 34anti-parallel
Strand 4
M
40 48anti-parallel
Strand 5
M
51 54anti-parallel
Strand 6
M
104 108anti-parallel
Strand 7
M
85 90anti-parallel
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There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
20 21first strand
Strand 2
N
156 161anti-parallel
Strand 3
N
135 140anti-parallel
Strand 4
N
198 201anti-parallel
Strand 5
N
208 215anti-parallel
Strand 6
N
226 230anti-parallel
Strand 7
N
180 183anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
81 82first strand
Strand 2
N
64 67anti-parallel
Strand 3
N
30 34anti-parallel
Strand 4
N
40 48anti-parallel
Strand 5
N
51 54anti-parallel
Strand 6
N
104 108anti-parallel
Strand 7
N
85 90anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
20 21first strand
Strand 2
O
156 161anti-parallel
Strand 3
O
135 140anti-parallel
Strand 4
O
198 201anti-parallel
Strand 5
O
208 215anti-parallel
Strand 6
O
226 230anti-parallel
Strand 7
O
180 183anti-parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
81 82first strand
Strand 2
O
64 67anti-parallel
Strand 3
O
30 34anti-parallel
Strand 4
O
40 48anti-parallel
Strand 5
O
51 54anti-parallel
Strand 6
O
104 108anti-parallel
Strand 7
O
85 90anti-parallel
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There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
20 21first strand
Strand 2
P
156 161anti-parallel
Strand 3
P
135 140anti-parallel
Strand 4
P
198 201anti-parallel
Strand 5
P
208 215anti-parallel
Strand 6
P
226 230anti-parallel
Strand 7
P
180 183anti-parallel
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There are 7 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
81 82first strand
Strand 2
P
64 67anti-parallel
Strand 3
P
30 34anti-parallel
Strand 4
P
40 48anti-parallel
Strand 5
P
51 54anti-parallel
Strand 6
P
104 108anti-parallel
Strand 7
P
85 90anti-parallel
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