Analysis of interatomic Contacts of Structural Units in PDB entry:
2BVC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2BVC entry

There are 6 chains in PDB entry 2BVC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	VAL 478
B	LYS 4	VAL 478
C	LYS 4	VAL 478
D	LYS 4	VAL 478
E	LYS 4	VAL 478
F	LYS 4	VAL 478

There are 90 helices in PDB entry 2BVC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	5	16	Right-handed alpha
Helix 2	2	A	40	42	Right-handed 310
Helix 3	3	A	43	49	Right-handed alpha
Helix 4	4	A	107	122	Right-handed alpha
Helix 5	5	A	195	209	Right-handed alpha
Helix 6	6	A	235	256	Right-handed alpha
Helix 7	7	A	299	313	Right-handed alpha
Helix 8	8	A	317	321	Right-handed alpha
Helix 9	12	A	325	330	Right-handed alpha
Helix 10	10	A	375	393	Right-handed alpha
Helix 11	11	A	409	415	Right-handed alpha
Helix 12	12	A	422	433	Right-handed alpha
Helix 13	13	A	434	439	Right-handed alpha
Helix 14	14	A	444	465	Right-handed alpha
Helix 15	15	A	468	475	Right-handed alpha
Helix 16	16	B	5	16	Right-handed alpha
Helix 17	17	B	40	42	Right-handed 310
Helix 18	18	B	43	49	Right-handed alpha
Helix 19	19	B	107	122	Right-handed alpha
Helix 20	20	B	195	209	Right-handed alpha
Helix 21	21	B	235	256	Right-handed alpha
Helix 22	22	B	299	313	Right-handed alpha
Helix 23	23	B	317	321	Right-handed alpha
Helix 24	24	B	325	330	Right-handed alpha
Helix 25	25	B	375	393	Right-handed alpha
Helix 26	26	B	409	415	Right-handed alpha
Helix 27	27	B	422	433	Right-handed alpha
Helix 28	28	B	434	439	Right-handed alpha
Helix 29	29	B	444	465	Right-handed alpha
Helix 30	30	B	468	475	Right-handed alpha
Helix 31	31	C	5	16	Right-handed alpha
Helix 32	32	C	40	42	Right-handed 310
Helix 33	33	C	43	49	Right-handed alpha
Helix 34	34	C	107	122	Right-handed alpha
Helix 35	35	C	195	209	Right-handed alpha
Helix 36	36	C	235	256	Right-handed alpha
Helix 37	37	C	299	313	Right-handed alpha
Helix 38	38	C	317	321	Right-handed alpha
Helix 39	39	C	325	330	Right-handed alpha
Helix 40	40	C	375	393	Right-handed alpha
Helix 41	41	C	409	415	Right-handed alpha
Helix 42	42	C	422	433	Right-handed alpha
Helix 43	43	C	434	439	Right-handed alpha
Helix 44	44	C	444	465	Right-handed alpha
Helix 45	45	C	468	475	Right-handed alpha
Helix 46	46	D	5	16	Right-handed alpha
Helix 47	47	D	40	42	Right-handed 310
Helix 48	48	D	43	49	Right-handed alpha
Helix 49	49	D	107	122	Right-handed alpha
Helix 50	50	D	195	209	Right-handed alpha
Helix 51	51	D	235	256	Right-handed alpha
Helix 52	52	D	299	313	Right-handed alpha
Helix 53	53	D	317	321	Right-handed alpha
Helix 54	54	D	325	330	Right-handed alpha
Helix 55	55	D	375	393	Right-handed alpha
Helix 56	56	D	409	415	Right-handed alpha
Helix 57	57	D	422	433	Right-handed alpha
Helix 58	58	D	434	439	Right-handed alpha
Helix 59	59	D	444	465	Right-handed alpha
Helix 60	60	D	468	475	Right-handed alpha
Helix 61	61	E	5	16	Right-handed alpha
Helix 62	62	E	40	42	Right-handed 310
Helix 63	63	E	43	49	Right-handed alpha
Helix 64	64	E	107	122	Right-handed alpha
Helix 65	65	E	195	209	Right-handed alpha
Helix 66	66	E	235	256	Right-handed alpha
Helix 67	67	E	299	313	Right-handed alpha
Helix 68	68	E	317	321	Right-handed alpha
Helix 69	69	E	325	330	Right-handed alpha
Helix 70	70	E	375	393	Right-handed alpha
Helix 71	71	E	409	415	Right-handed alpha
Helix 72	72	E	422	433	Right-handed alpha
Helix 73	73	E	434	439	Right-handed alpha
Helix 74	74	E	444	465	Right-handed alpha
Helix 75	75	E	468	475	Right-handed alpha
Helix 76	76	F	5	16	Right-handed alpha
Helix 77	77	F	40	42	Right-handed 310
Helix 78	78	F	43	49	Right-handed alpha
Helix 79	79	F	107	122	Right-handed alpha
Helix 80	80	F	195	209	Right-handed alpha
Helix 81	81	F	235	256	Right-handed alpha
Helix 82	82	F	299	313	Right-handed alpha
Helix 83	83	F	317	321	Right-handed alpha
Helix 84	84	F	325	330	Right-handed alpha
Helix 85	85	F	375	393	Right-handed alpha
Helix 86	86	F	409	415	Right-handed alpha
Helix 87	87	F	422	433	Right-handed alpha
Helix 88	88	F	434	439	Right-handed alpha
Helix 89	89	F	444	465	Right-handed alpha
Helix 90	90	F	468	475	Right-handed alpha

There are 27 sheets in PDB entry 2BVC. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, CA, CB, CC, CD, A, DB, C, DD, EA, EB, EC, ED, FA, FB, FC, FD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	38	first strand
Strand 2	A	20	26	anti-parallel
Strand 3	A	88	96	parallel
Strand 4	A	68	73	anti-parallel
Strand 5	A	51	54	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	38	first strand
Strand 2	A	20	26	anti-parallel
Strand 3	A	88	96	parallel
Strand 4	A	79	80	anti-parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	234	first strand
Strand 2	A	127	134	anti-parallel
Strand 3	A	275	283	anti-parallel
Strand 4	A	365	367	anti-parallel
Strand 5	A	351	353	anti-parallel
Strand 6	A	342	344	parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	234	first strand
Strand 2	A	127	134	anti-parallel
Strand 3	A	275	283	anti-parallel
Strand 4	A	286	287	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	218	first strand
Strand 2	A	225	230	anti-parallel
Strand 3	A	136	139	anti-parallel
Strand 4	A	259	261	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	146	first strand
Strand 2	A	151	156	anti-parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	38	first strand
Strand 2	B	20	26	anti-parallel
Strand 3	B	88	96	parallel
Strand 4	B	68	73	anti-parallel
Strand 5	B	51	54	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	38	first strand
Strand 2	B	20	26	anti-parallel
Strand 3	B	88	96	parallel
Strand 4	B	79	80	anti-parallel

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There are 9 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	234	first strand
Strand 2	B	127	134	anti-parallel
Strand 3	B	275	283	anti-parallel
Strand 4	B	286	287	anti-parallel
Strand 5	B	275	283	anti-parallel
Strand 6	B	342	344	first strand
Strand 7	B	351	353	parallel
Strand 8	B	365	367	anti-parallel
Strand 9	B	275	283	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	218	first strand
Strand 2	B	225	230	anti-parallel
Strand 3	B	136	139	anti-parallel
Strand 4	B	259	261	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	146	first strand
Strand 2	B	151	156	anti-parallel

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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	38	first strand
Strand 2	C	20	26	anti-parallel
Strand 3	C	88	96	parallel
Strand 4	C	51	54	first strand
Strand 5	C	68	73	anti-parallel
Strand 6	C	88	96	anti-parallel
Strand 7	C	79	80	anti-parallel
Strand 8	C	88	96	anti-parallel

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There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	234	first strand
Strand 2	C	127	134	anti-parallel
Strand 3	C	275	283	anti-parallel
Strand 4	C	286	287	anti-parallel
Strand 5	C	275	283	anti-parallel
Strand 6	C	342	344	first strand
Strand 7	C	351	353	parallel
Strand 8	C	365	367	anti-parallel
Strand 9	C	275	283	anti-parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	218	first strand
Strand 2	C	225	230	anti-parallel
Strand 3	C	136	139	anti-parallel
Strand 4	C	259	261	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	146	first strand
Strand 2	C	151	156	anti-parallel

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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	38	first strand
Strand 2	D	20	26	anti-parallel
Strand 3	D	88	96	parallel
Strand 4	D	51	54	first strand
Strand 5	D	68	73	anti-parallel
Strand 6	D	88	96	anti-parallel
Strand 7	D	79	80	anti-parallel
Strand 8	D	88	96	anti-parallel

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There are 9 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	234	first strand
Strand 2	D	127	134	anti-parallel
Strand 3	D	275	283	anti-parallel
Strand 4	D	286	287	anti-parallel
Strand 5	D	275	283	anti-parallel
Strand 6	D	342	344	first strand
Strand 7	D	351	353	parallel
Strand 8	D	365	367	anti-parallel
Strand 9	D	275	283	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	218	first strand
Strand 2	D	225	230	anti-parallel
Strand 3	D	136	139	anti-parallel
Strand 4	D	259	261	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	146	first strand
Strand 2	D	151	156	anti-parallel

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There are 8 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	38	first strand
Strand 2	E	20	26	anti-parallel
Strand 3	E	88	96	parallel
Strand 4	E	51	54	first strand
Strand 5	E	68	73	anti-parallel
Strand 6	E	88	96	anti-parallel
Strand 7	E	79	80	anti-parallel
Strand 8	E	88	96	anti-parallel

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There are 9 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	233	234	first strand
Strand 2	E	127	134	anti-parallel
Strand 3	E	275	283	anti-parallel
Strand 4	E	286	287	anti-parallel
Strand 5	E	275	283	anti-parallel
Strand 6	E	342	344	first strand
Strand 7	E	351	353	parallel
Strand 8	E	365	367	anti-parallel
Strand 9	E	275	283	anti-parallel

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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	213	218	first strand
Strand 2	E	225	230	anti-parallel
Strand 3	E	136	139	anti-parallel
Strand 4	E	259	261	anti-parallel

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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	146	first strand
Strand 2	E	151	156	anti-parallel

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There are 8 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	38	first strand
Strand 2	F	20	26	anti-parallel
Strand 3	F	88	96	parallel
Strand 4	F	51	54	first strand
Strand 5	F	68	73	anti-parallel
Strand 6	F	88	96	anti-parallel
Strand 7	F	79	80	anti-parallel
Strand 8	F	88	96	anti-parallel

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There are 9 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	233	234	first strand
Strand 2	F	127	134	anti-parallel
Strand 3	F	275	283	anti-parallel
Strand 4	F	286	287	anti-parallel
Strand 5	F	275	283	anti-parallel
Strand 6	F	342	344	first strand
Strand 7	F	351	353	parallel
Strand 8	F	365	367	anti-parallel
Strand 9	F	275	283	anti-parallel

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There are 4 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	213	218	first strand
Strand 2	F	225	230	anti-parallel
Strand 3	F	136	139	anti-parallel
Strand 4	F	259	261	anti-parallel

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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	141	146	first strand
Strand 2	F	151	156	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2BVC

Analysis of interatomic Contacts of Structural Units in PDB entry:
2BVC