Analysis of interatomic Contacts of Structural Units in PDB entry:
2CCD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CCD entry

There are 2 chains in PDB entry 2CCD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 26ARG 740
B
 MET 26ARG 740
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 2CCD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 32Right-handed 310
Helix 2
2
A
34 39Right-handed alpha
Helix 3
3
A
44 49Right-handed 310
Helix 4
4
A
52 56Right-handed 310
Helix 5
5
A
63 69Right-handed alpha
Helix 6
6
A
72 85Right-handed alpha
Helix 7
7
A
93 97Right-handed 310
Helix 8
8
A
98 111Right-handed alpha
Helix 9
9
A
121 125Right-handed 310
Helix 10
10
A
125 129Right-handed 310
Helix 11
11
A
131 135Right-handed 310
Helix 12
12
A
135 139Right-handed 310
Helix 13
13
A
140 147Right-handed alpha
Helix 14
14
A
148 156Right-handed alpha
Helix 15
15
A
157 159Right-handed 310
Helix 16
16
A
160 176Right-handed alpha
Helix 17
17
A
234 238Right-handed 310
Helix 18
18
A
240 254Right-handed alpha
Helix 19
19
A
258 271Right-handed alpha
Helix 20
20
A
280 283Right-handed 310
Helix 21
21
A
287 291Right-handed 310
Helix 22
22
A
292 296Right-handed 310
Helix 23
23
A
308 312Right-handed 310
Helix 24
24
A
330 337Right-handed alpha
Helix 25
25
A
378 400Right-handed alpha
Helix 26
26
A
401 418Right-handed alpha
Helix 27
27
A
422 426Right-handed 310
Helix 28
28
A
436 440Right-handed 310
Helix 29
29
A
451 464Right-handed alpha
Helix 30
30
A
468 481Right-handed alpha
Helix 31
31
A
495 499Right-handed 310
Helix 32
32
A
501 505Right-handed 310
Helix 33
33
A
513 532Right-handed alpha
Helix 34
34
A
539 559Right-handed alpha
Helix 35
35
A
575 579Right-handed 310
Helix 36
36
A
580 585Right-handed alpha
Helix 37
37
A
586 588Right-handed 310
Helix 38
38
A
605 617Right-handed alpha
Helix 39
39
A
620 635Right-handed alpha
Helix 40
40
A
637 641Right-handed 310
Helix 41
41
A
655 662Right-handed alpha
Helix 42
42
A
693 712Right-handed alpha
Helix 43
43
A
716 733Right-handed alpha
Helix 44
44
A
736 740Right-handed 310
Helix 45
45
B
28 32Right-handed 310
Helix 46
46
B
34 38Right-handed 310
Helix 47
47
B
44 49Right-handed 310
Helix 48
48
B
52 56Right-handed 310
Helix 49
49
B
63 69Right-handed alpha
Helix 50
50
B
72 85Right-handed alpha
Helix 51
51
B
93 97Right-handed 310
Helix 52
52
B
98 111Right-handed alpha
Helix 53
53
B
125 129Right-handed 310
Helix 54
54
B
131 135Right-handed 310
Helix 55
55
B
135 139Right-handed 310
Helix 56
56
B
140 147Right-handed alpha
Helix 57
57
B
148 156Right-handed alpha
Helix 58
58
B
157 159Right-handed 310
Helix 59
59
B
160 176Right-handed alpha
Helix 60
60
B
234 238Right-handed 310
Helix 61
61
B
240 254Right-handed alpha
Helix 62
62
B
258 271Right-handed alpha
Helix 63
63
B
280 283Right-handed 310
Helix 64
64
B
287 291Right-handed 310
Helix 65
65
B
292 296Right-handed 310
Helix 66
66
B
308 312Right-handed 310
Helix 67
67
B
330 339Right-handed alpha
Helix 68
68
B
357 359Right-handed 310
Helix 69
69
B
378 418Right-handed alpha
Helix 70
70
B
422 426Right-handed 310
Helix 71
71
B
436 440Right-handed 310
Helix 72
72
B
451 464Right-handed alpha
Helix 73
73
B
468 481Right-handed alpha
Helix 74
74
B
495 499Right-handed 310
Helix 75
75
B
513 530Right-handed alpha
Helix 76
76
B
539 559Right-handed alpha
Helix 77
77
B
575 579Right-handed 310
Helix 78
78
B
583 588Right-handed 310
Helix 79
79
B
593 596Right-handed 310
Helix 80
80
B
605 617Right-handed alpha
Helix 81
81
B
620 635Right-handed alpha
Helix 82
82
B
637 641Right-handed 310
Helix 83
83
B
655 662Right-handed alpha
Helix 84
84
B
692 701Right-handed alpha
Helix 85
85
B
701 712Right-handed alpha
Helix 86
86
B
716 734Right-handed alpha
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There are 8 sheets in PDB entry 2CCD. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
215 216anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 345first strand
Strand 2
A
351 355anti-parallel
Strand 3
A
376 377anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 592first strand
Strand 2
A
597 598anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
667 670first strand
Strand 2
A
677 681anti-parallel
Strand 3
A
687 692anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 211first strand
Strand 2
B
215 216anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 345first strand
Strand 2
B
351 355anti-parallel
Strand 3
B
376 377anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
591 592first strand
Strand 2
B
597 598anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
667 670first strand
Strand 2
B
678 681anti-parallel
Strand 3
B
687 691anti-parallel
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