Analysis of interatomic Contacts of Structural Units in PDB entry:
2CJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CJW entry

There are 9 chains in PDB entry 2CJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 73SER 101
A
 GLU 107ARG 197
A
 ARG 199ALA 208
A
 ALA 210ASP 214
A
 LYS 216ARG 258
B
 GLU 70HIS 145
B
 MET 147ARG 197
B
 ARG 199ALA 208
B
 ALA 210SER 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2CJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
87 99Right-handed alpha
Helix 2
2
A
106 110Right-handed 310
Helix 3
3
A
142 144Right-handed 310
Helix 4
4
A
145 150Right-handed alpha
Helix 5
5
A
161 179Right-handed alpha
Helix 6
6
A
195 199Right-handed 310
Helix 7
7
A
202 213Right-handed alpha
Helix 8
8
A
227 244Right-handed alpha
Helix 9
9
A
245 258Right-handed alpha
Helix 10
10
B
87 97Right-handed alpha
Helix 11
11
B
145 150Right-handed alpha
Helix 12
12
B
161 179Right-handed alpha
Helix 13
13
B
195 199Right-handed 310
Helix 14
14
B
202 214Right-handed alpha
Helix 15
15
B
227 244Right-handed alpha
Helix 16
16
B
245 261Right-handed alpha
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There are 2 sheets in PDB entry 2CJW. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 120first strand
Strand 2
A
123 130anti-parallel
Strand 3
A
75 81parallel
Strand 4
A
152 158parallel
Strand 5
A
186 191parallel
Strand 6
A
216 219parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 120first strand
Strand 2
B
123 130anti-parallel
Strand 3
B
75 82parallel
Strand 4
B
152 158parallel
Strand 5
B
186 191parallel
Strand 6
B
216 220parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il