Analysis of interatomic Contacts of Structural Units in PDB entry:
2CNK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CNK entry

There are 3 chains in PDB entry 2CNK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 29THR 174
B
ALA 175HIS 277
I
ASP 902VAL 904
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2CNK. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
56 60Right-handed 310
Helix 2
2
A
66 80Right-handed alpha
Helix 3
3
A
92 105Right-handed alpha
Helix 4
4
A
136 142Right-handed alpha
Helix 5
5
A
148 152Right-handed 310
Helix 6
6
B
214 227Right-handed alpha
Helix 7
7
B
231 247Right-handed alpha
Helix 8
8
B
253 257Right-handed 310
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There are 3 sheets in PDB entry 2CNK. Click on sheet of interest to get list of strands forming it: AA, AB, BA,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
84 89first strand
Strand 2
A
43 51parallel
Strand 3
A
111 119parallel
Strand 4
A
156 161parallel
Strand 5
B
193 197parallel
Strand 6
B
264 267anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
122 123first strand
Strand 2
A
126 129anti-parallel
Strand 3
A
132 135anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
207 208first strand
Strand 2
B
212 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il