Analysis of interatomic Contacts of Structural Units in PDB entry:
2D0U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D0U entry

There are 2 chains in PDB entry 2D0U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 12GLY 403
B
ILE 11GLY 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 2D0U. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
33 35Right-handed 310
Helix 2
2
A
36 45Right-handed alpha
Helix 3
3
A
45 52Right-handed alpha
Helix 4
4
A
54 61Right-handed alpha
Helix 5
5
A
72 93Right-handed alpha
Helix 6
6
A
104 119Right-handed alpha
Helix 7
7
A
125 130Right-handed alpha
Helix 8
8
A
144 146Right-handed 310
Helix 9
9
A
159 179Right-handed alpha
Helix 10
10
A
180 190Right-handed alpha
Helix 11
11
A
192 215Right-handed alpha
Helix 12
12
A
216 221Right-handed alpha
Helix 13
13
A
222 229Right-handed alpha
Helix 14
14
A
229 234Right-handed alpha
Helix 15
15
A
240 244Right-handed 310
Helix 16
16
A
263 266Right-handed 310
Helix 17
17
A
267 277Right-handed alpha
Helix 18
18
A
286 296Right-handed alpha
Helix 19
19
A
297 299Right-handed 310
Helix 20
20
A
300 312Right-handed alpha
Helix 21
21
A
315 322Right-handed alpha
Helix 22
22
A
325 354Right-handed alpha
Helix 23
23
A
354 359Right-handed alpha
Helix 24
24
A
381 398Right-handed alpha
Helix 25
25
B
33 35Right-handed 310
Helix 26
26
B
36 45Right-handed alpha
Helix 27
27
B
45 52Right-handed alpha
Helix 28
28
B
54 61Right-handed alpha
Helix 29
29
B
72 93Right-handed alpha
Helix 30
30
B
104 119Right-handed alpha
Helix 31
31
B
125 130Right-handed alpha
Helix 32
32
B
144 146Right-handed 310
Helix 33
33
B
159 179Right-handed alpha
Helix 34
34
B
180 190Right-handed alpha
Helix 35
35
B
192 215Right-handed alpha
Helix 36
36
B
216 221Right-handed alpha
Helix 37
37
B
222 229Right-handed alpha
Helix 38
38
B
229 234Right-handed alpha
Helix 39
39
B
240 244Right-handed 310
Helix 40
40
B
263 266Right-handed 310
Helix 41
41
B
267 277Right-handed alpha
Helix 42
42
B
286 296Right-handed alpha
Helix 43
43
B
297 299Right-handed 310
Helix 44
44
B
300 312Right-handed alpha
Helix 45
45
B
315 322Right-handed alpha
Helix 46
46
B
325 354Right-handed alpha
Helix 47
47
B
354 359Right-handed alpha
Helix 48
48
B
381 398Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2D0U. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
102 103first strand
Strand 2
A
248 249parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
135 136first strand
Strand 2
A
148 149anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
102 103first strand
Strand 2
B
248 249parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
135 136first strand
Strand 2
B
148 149anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il