Analysis of interatomic Contacts of Structural Units in PDB entry:
2DGW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DGW entry

There is 1 chain in PDB entry 2DGW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 284GLY 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 2DGW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
306 315Right-handed alpha
Helix 2
2
A
342 352Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2DGW.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 326first strand
Strand 2
A
332 339anti-parallel
Strand 3
A
295 299anti-parallel
Strand 4
A
360 367anti-parallel
Strand 5
A
355 357anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il