Analysis of interatomic Contacts of Structural Units in PDB entry:
2DQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DQY entry

There are 3 chains in PDB entry 2DQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1021LYS 1553
B
 SER 2021LYS 2553
C
 SER 3021LYS 3553
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 2DQY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1060 1064Right-handed 310
Helix 2
2
A
1090 1102Right-handed alpha
Helix 3
3
A
1154 1162Right-handed alpha
Helix 4
4
A
1172 1178Right-handed alpha
Helix 5
5
A
1188 1203Right-handed alpha
Helix 6
6
A
1204 1208Right-handed 310
Helix 7
7
A
1221 1233Right-handed alpha
Helix 8
8
A
1252 1256Right-handed 310
Helix 9
9
A
1261 1272Right-handed alpha
Helix 10
10
A
1278 1289Right-handed alpha
Helix 11
11
A
1290 1302Right-handed alpha
Helix 12
12
A
1311 1315Right-handed 310
Helix 13
13
A
1331 1337Right-handed alpha
Helix 14
14
A
1357 1364Right-handed alpha
Helix 15
15
A
1374 1385Right-handed alpha
Helix 16
16
A
1385 1390Right-handed alpha
Helix 17
17
A
1395 1405Right-handed alpha
Helix 18
18
A
1409 1426Right-handed alpha
Helix 19
19
A
1426 1441Right-handed alpha
Helix 20
20
A
1471 1476Right-handed alpha
Helix 21
21
A
1477 1481Right-handed 310
Helix 22
22
A
1486 1507Right-handed alpha
Helix 23
23
A
1540 1552Right-handed alpha
Helix 24
24
B
2060 2064Right-handed 310
Helix 25
25
B
2090 2102Right-handed alpha
Helix 26
26
B
2154 2162Right-handed alpha
Helix 27
27
B
2172 2178Right-handed alpha
Helix 28
28
B
2188 2205Right-handed alpha
Helix 29
29
B
2206 2208Right-handed 310
Helix 30
30
B
2221 2233Right-handed alpha
Helix 31
31
B
2252 2256Right-handed 310
Helix 32
32
B
2261 2272Right-handed alpha
Helix 33
33
B
2278 2289Right-handed alpha
Helix 34
34
B
2290 2301Right-handed alpha
Helix 35
35
B
2311 2315Right-handed 310
Helix 36
36
B
2331 2337Right-handed alpha
Helix 37
37
B
2357 2364Right-handed alpha
Helix 38
38
B
2367 2371Right-handed 310
Helix 39
39
B
2374 2385Right-handed alpha
Helix 40
40
B
2385 2390Right-handed alpha
Helix 41
41
B
2395 2405Right-handed alpha
Helix 42
42
B
2409 2426Right-handed alpha
Helix 43
43
B
2426 2441Right-handed alpha
Helix 44
44
B
2471 2476Right-handed alpha
Helix 45
45
B
2477 2481Right-handed 310
Helix 46
46
B
2486 2507Right-handed alpha
Helix 47
47
B
2540 2552Right-handed alpha
Helix 48
48
C
3060 3064Right-handed 310
Helix 49
49
C
3090 3102Right-handed alpha
Helix 50
50
C
3154 3162Right-handed alpha
Helix 51
51
C
3172 3178Right-handed alpha
Helix 52
52
C
3188 3203Right-handed alpha
Helix 53
53
C
3204 3208Right-handed 310
Helix 54
54
C
3221 3233Right-handed alpha
Helix 55
55
C
3252 3256Right-handed 310
Helix 56
56
C
3261 3272Right-handed alpha
Helix 57
57
C
3278 3289Right-handed alpha
Helix 58
58
C
3290 3302Right-handed alpha
Helix 59
59
C
3311 3315Right-handed 310
Helix 60
60
C
3331 3337Right-handed alpha
Helix 61
61
C
3357 3365Right-handed alpha
Helix 62
62
C
3374 3385Right-handed alpha
Helix 63
63
C
3385 3390Right-handed alpha
Helix 64
64
C
3395 3405Right-handed alpha
Helix 65
65
C
3409 3426Right-handed alpha
Helix 66
66
C
3426 3441Right-handed alpha
Helix 67
67
C
3471 3476Right-handed alpha
Helix 68
68
C
3477 3481Right-handed 310
Helix 69
69
C
3486 3507Right-handed alpha
Helix 70
70
C
3540 3552Right-handed alpha
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There are 10 sheets in PDB entry 2DQY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1025 1028first strand
Strand 2
A
1031 1034anti-parallel
Strand 3
A
1078 1079parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1036 1038first strand
Strand 2
A
1047 1054anti-parallel
Strand 3
A
1118 1123anti-parallel
Strand 4
A
1164 1168anti-parallel
Strand 5
A
1133 1139parallel
Strand 6
A
1210 1220parallel
Strand 7
A
1242 1246parallel
Strand 8
A
1346 1351parallel
Strand 9
A
1444 1450parallel
Strand 10
A
1525 1530parallel
Strand 11
A
1534 1537anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1086 1087first strand
Strand 2
A
1112 1113parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2025 2028first strand
Strand 2
B
2031 2034anti-parallel
Strand 3
B
2078 2079parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2036 2038first strand
Strand 2
B
2047 2054anti-parallel
Strand 3
B
2118 2123anti-parallel
Strand 4
B
2164 2168anti-parallel
Strand 5
B
2133 2139parallel
Strand 6
B
2210 2220parallel
Strand 7
B
2242 2246parallel
Strand 8
B
2346 2351parallel
Strand 9
B
2444 2449parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2086 2087first strand
Strand 2
B
2112 2113parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2525 2528first strand
Strand 2
B
2534 2537anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3025 3028first strand
Strand 2
C
3031 3034anti-parallel
Strand 3
C
3078 3079parallel
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There are 11 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3036 3038first strand
Strand 2
C
3047 3054anti-parallel
Strand 3
C
3118 3123anti-parallel
Strand 4
C
3164 3168anti-parallel
Strand 5
C
3133 3139parallel
Strand 6
C
3210 3220parallel
Strand 7
C
3242 3246parallel
Strand 8
C
3346 3351parallel
Strand 9
C
3444 3450parallel
Strand 10
C
3525 3530parallel
Strand 11
C
3534 3537anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3086 3087first strand
Strand 2
C
3112 3113parallel
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