Analysis of interatomic Contacts of Structural Units in PDB entry:
2DWP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DWP entry

There is 1 chain in PDB entry 2DWP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 3SER 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 2DWP. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
46 61Right-handed alpha
Helix 2
2
A
70 78Right-handed alpha
Helix 3
3
A
83 88Right-handed 310
Helix 4
4
A
91 116Right-handed alpha
Helix 5
5
A
129 144Right-handed alpha
Helix 6
6
A
156 168Right-handed alpha
Helix 7
7
A
171 175Right-handed 310
Helix 8
8
A
178 195Right-handed alpha
Helix 9
9
A
228 239Right-handed alpha
Helix 10
10
A
256 262Right-handed alpha
Helix 11
11
A
271 287Right-handed alpha
Helix 12
12
A
300 309Right-handed alpha
Helix 13
13
A
318 321Right-handed 310
Helix 14
14
A
325 329Right-handed 310
Helix 15
15
A
332 340Right-handed alpha
Helix 16
16
A
340 349Right-handed alpha
Helix 17
17
A
361 379Right-handed alpha
Helix 18
18
A
387 399Right-handed alpha
Helix 19
19
A
405 409Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 2DWP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 6first strand
Strand 2
A
13 15anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
65 69first strand
Strand 2
A
120 124parallel
Strand 3
A
35 40parallel
Strand 4
A
146 153parallel
Strand 5
A
210 215parallel
Strand 6
A
220 224anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
314 316first strand
Strand 2
A
294 297parallel
Strand 3
A
382 386parallel
Strand 4
A
248 252parallel
Strand 5
A
415 422anti-parallel
Strand 6
A
425 432anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il