Analysis of interatomic Contacts of Structural Units in PDB entry:
2DZS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DZS entry

There are 2 chains in PDB entry 2DZS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 248
B
 MET 1ILE 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 2DZS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 30Right-handed alpha
Helix 2
2
A
48 61Right-handed alpha
Helix 3
3
A
66 77Right-handed alpha
Helix 4
4
A
88 96Right-handed alpha
Helix 5
5
A
96 108Right-handed alpha
Helix 6
6
A
118 120Right-handed 310
Helix 7
7
A
121 132Right-handed alpha
Helix 8
8
A
145 156Right-handed alpha
Helix 9
9
A
176 188Right-handed alpha
Helix 10
10
A
202 212Right-handed alpha
Helix 11
11
A
220 231Right-handed alpha
Helix 12
12
A
234 246Right-handed alpha
Helix 13
13
B
17 29Right-handed alpha
Helix 14
14
B
30 32Right-handed 310
Helix 15
15
B
48 61Right-handed alpha
Helix 16
16
B
66 77Right-handed alpha
Helix 17
17
B
88 96Right-handed alpha
Helix 18
18
B
96 108Right-handed alpha
Helix 19
19
B
118 120Right-handed 310
Helix 20
20
B
121 132Right-handed alpha
Helix 21
21
B
145 156Right-handed alpha
Helix 22
22
B
176 188Right-handed alpha
Helix 23
23
B
202 212Right-handed alpha
Helix 24
24
B
220 231Right-handed alpha
Helix 25
25
B
234 247Right-handed alpha
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There are 2 sheets in PDB entry 2DZS. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 12first strand
Strand 2
A
35 38parallel
Strand 3
A
83 87parallel
Strand 4
A
111 114parallel
Strand 5
A
135 140parallel
Strand 6
A
159 163parallel
Strand 7
A
194 197parallel
Strand 8
A
216 219parallel
Strand 9
A
6 12parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 12first strand
Strand 2
B
35 38parallel
Strand 3
B
83 87parallel
Strand 4
B
111 114parallel
Strand 5
B
135 140parallel
Strand 6
B
159 163parallel
Strand 7
B
194 197parallel
Strand 8
B
216 219parallel
Strand 9
B
6 12parallel
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