Analysis of interatomic Contacts of Structural Units in PDB entry:
2E8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2E8A entry

There is 1 chain in PDB entry 2E8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 3GLY 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2E8A. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
52 58Right-handed alpha
Helix 2
2
A
59 64Right-handed 310
Helix 3
3
A
69 74Right-handed alpha
Helix 4
4
A
80 88Right-handed alpha
Helix 5
5
A
115 136Right-handed alpha
Helix 6
6
A
151 165Right-handed alpha
Helix 7
7
A
175 183Right-handed alpha
Helix 8
8
A
229 250Right-handed alpha
Helix 9
9
A
256 274Right-handed alpha
Helix 10
10
A
299 313Right-handed alpha
Helix 11
11
A
313 324Right-handed alpha
Helix 12
12
A
327 331Right-handed 310
Helix 13
13
A
338 342Right-handed 310
Helix 14
14
A
343 354Right-handed alpha
Helix 15
15
A
367 382Right-handed alpha
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There are 6 sheets in PDB entry 2E8A. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
25 28first strand
Strand 2
A
15 22anti-parallel
Strand 3
A
38 39anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
25 28first strand
Strand 2
A
15 22anti-parallel
Strand 3
A
7 10anti-parallel
Strand 4
A
141 146parallel
Strand 5
A
168 174parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
49 51first strand
Strand 2
A
42 44anti-parallel
Strand 3
A
66 67anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
93 97first strand
Strand 2
A
100 107anti-parallel
Strand 3
A
110 114anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
216 225first strand
Strand 2
A
205 213anti-parallel
Strand 3
A
193 200anti-parallel
Strand 4
A
333 337parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
279 288first strand
Strand 2
A
291 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il