Analysis of interatomic Contacts of Structural Units in PDB entry:
2EJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2EJF entry

There are 4 chains in PDB entry 2EJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 235
B
 MET 1SER 231
C
 ASN 81GLY 149
D
 ASN 81GLY 149
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2EJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 29Right-handed alpha
Helix 2
2
A
71 75Right-handed 310
Helix 3
3
A
76 93Right-handed alpha
Helix 4
4
A
142 148Right-handed alpha
Helix 5
5
A
152 174Right-handed alpha
Helix 6
6
A
176 184Right-handed alpha
Helix 7
7
B
21 29Right-handed alpha
Helix 8
8
B
47 51Right-handed 310
Helix 9
9
B
71 75Right-handed 310
Helix 10
10
B
76 93Right-handed alpha
Helix 11
11
B
142 148Right-handed alpha
Helix 12
12
B
152 174Right-handed alpha
Helix 13
13
B
176 186Right-handed alpha
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There are 6 sheets in PDB entry 2EJF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 16 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
104 107anti-parallel
Strand 3
A
110 120anti-parallel
Strand 4
A
123 130anti-parallel
Strand 5
A
60 66anti-parallel
Strand 6
A
36 42anti-parallel
Strand 7
A
12 19parallel
Strand 8
B
12 19anti-parallel
Strand 9
B
36 42parallel
Strand 10
B
60 66anti-parallel
Strand 11
B
123 130anti-parallel
Strand 12
B
110 120anti-parallel
Strand 13
C
117 121first strand
Strand 14
C
107 112anti-parallel
Strand 15
C
89 94anti-parallel
Strand 16
C
138 139anti-parallel
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There are 16 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 100first strand
Strand 2
B
104 107anti-parallel
Strand 3
B
110 120anti-parallel
Strand 4
B
123 130anti-parallel
Strand 5
B
60 66anti-parallel
Strand 6
B
36 42anti-parallel
Strand 7
B
12 19parallel
Strand 8
A
12 19anti-parallel
Strand 9
A
36 42parallel
Strand 10
A
60 66anti-parallel
Strand 11
A
123 130anti-parallel
Strand 12
A
110 120anti-parallel
Strand 13
D
116 121first strand
Strand 14
D
107 113anti-parallel
Strand 15
D
89 94anti-parallel
Strand 16
D
138 139anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 225first strand
Strand 2
A
213 216anti-parallel
Strand 3
A
200 207anti-parallel
Strand 4
A
190 195anti-parallel
Strand 5
A
231 234anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 193first strand
Strand 2
B
201 207anti-parallel
Strand 3
B
213 217anti-parallel
Strand 4
B
221 225anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 84first strand
Strand 2
C
144 148anti-parallel
Strand 3
C
126 131anti-parallel
Strand 4
C
101 102anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
82 84first strand
Strand 2
D
144 149anti-parallel
Strand 3
D
126 131anti-parallel
Strand 4
D
101 102anti-parallel
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