Analysis of interatomic Contacts of Structural Units in PDB entry:
2ERY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ERY entry

There are 2 chains in PDB entry 2ERY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 10GLU 180
B
 GLU 13GLN 181
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2ERY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 37Right-handed alpha
Helix 2
2
A
76 86Right-handed alpha
Helix 3
3
A
97 103Right-handed alpha
Helix 4
4
A
103 116Right-handed alpha
Helix 5
5
A
138 149Right-handed alpha
Helix 6
6
A
163 179Right-handed alpha
Helix 7
7
B
26 37Right-handed alpha
Helix 8
8
B
81 86Right-handed alpha
Helix 9
9
B
97 102Right-handed alpha
Helix 10
10
B
103 116Right-handed alpha
Helix 11
11
B
131 135Right-handed 310
Helix 12
12
B
138 149Right-handed alpha
Helix 13
13
B
163 180Right-handed alpha
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There are 2 sheets in PDB entry 2ERY. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 57first strand
Strand 2
A
60 68anti-parallel
Strand 3
A
14 21parallel
Strand 4
A
88 94parallel
Strand 5
A
122 127parallel
Strand 6
A
152 155parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 57first strand
Strand 2
B
60 68anti-parallel
Strand 3
B
14 21parallel
Strand 4
B
88 94parallel
Strand 5
B
122 127parallel
Strand 6
B
152 155parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il