Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 2F1U entry
There are 7 chains in PDB entry 2F1U
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
ALA 35 | LYS 64 |
B
|
VAL 71 | MET 100 |
C
|
GLU 107 | ILE 139 |
D
|
ARG 151 | ILE 173 |
E
|
ARG 200 | LYS 225 |
F
|
THR 247 | TRP 277 |
G
|
LEU 286 | TYR 306 |
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There are 10
helices in PDB entry 2F1U. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 35 |
64 | Right-handed alpha |
Helix 2 |
2 | B
| 71 |
89 | Right-handed alpha |
Helix 3 |
3 | B
| 89 |
100 | Right-handed alpha |
Helix 4 |
4 | C
| 107 |
139 | Right-handed alpha |
Helix 5 |
5 | D
| 151 |
173 | Right-handed alpha |
Helix 6 |
6 | E
| 200 |
212 | Right-handed alpha |
Helix 7 |
7 | E
| 212 |
225 | Right-handed alpha |
Helix 8 |
8 | F
| 247 |
277 | Right-handed alpha |
Helix 9 |
9 | G
| 286 |
296 | Right-handed alpha |
Helix 10 |
10 | G
| 297 |
306 | Right-handed alpha |
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There are no sheets in PDB entry
2F1U
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il