Analysis of interatomic Contacts of Structural Units in PDB entry:
2FYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2FYT entry

There is 1 chain in PDB entry 2FYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 238GLN 548
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2FYT. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
239 242Right-handed 310
Helix 2
2
A
243 252Right-handed alpha
Helix 3
3
A
253 267Right-handed alpha
Helix 4
4
A
268 271Right-handed 310
Helix 5
5
A
284 293Right-handed alpha
Helix 6
6
A
305 317Right-handed alpha
Helix 7
7
A
356 368Right-handed alpha
Helix 8
8
A
389 397Right-handed alpha
Helix 9
9
A
398 402Right-handed 310
Helix 10
10
A
408 410Right-handed 310
Helix 11
11
A
411 416Right-handed alpha
Helix 12
12
A
425 429Right-handed 310
Helix 13
13
A
445 450Right-handed 310
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There are 4 sheets in PDB entry 2FYT. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
323 327first strand
Strand 2
A
297 302parallel
Strand 3
A
275 279parallel
Strand 4
A
340 345parallel
Strand 5
A
369 376parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
420 422first strand
Strand 2
A
499 510anti-parallel
Strand 3
A
463 476anti-parallel
Strand 4
A
379 387anti-parallel
Strand 5
A
434 440anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
420 422first strand
Strand 2
A
499 510anti-parallel
Strand 3
A
463 476anti-parallel
Strand 4
A
484 487anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
451 458first strand
Strand 2
A
515 524anti-parallel
Strand 3
A
532 538anti-parallel
Strand 4
A
541 547anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il