Analysis of interatomic Contacts of Structural Units in PDB entry:
2GB7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GB7 entry

There are 8 chains in PDB entry 2GB7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 DC -4 DC 4
F
 DG -4 DG 4
G
 DC -4 DC 4
H
 DG -4 DG 4
A
 ARG 3ALA 302
B
 ARG 3ASP 305
C
 LEU 4PHE 304
D
 LEU 4PHE 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 2GB7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 21Right-handed alpha
Helix 2
2
A
23 35Right-handed alpha
Helix 3
3
A
36 40Right-handed 310
Helix 4
4
A
41 48Right-handed alpha
Helix 5
5
A
48 63Right-handed alpha
Helix 6
6
A
64 78Right-handed alpha
Helix 7
7
A
81 86Right-handed alpha
Helix 8
8
A
89 101Right-handed alpha
Helix 9
9
A
101 135Right-handed alpha
Helix 10
10
A
143 145Right-handed 310
Helix 11
11
A
165 172Right-handed alpha
Helix 12
12
A
187 189Right-handed 310
Helix 13
13
A
190 200Right-handed alpha
Helix 14
14
A
214 224Right-handed alpha
Helix 15
15
A
231 239Right-handed alpha
Helix 16
16
A
248 261Right-handed alpha
Helix 17
17
A
268 286Right-handed alpha
Helix 18
18
A
289 302Right-handed alpha
Helix 19
19
B
5 21Right-handed alpha
Helix 20
20
B
23 35Right-handed alpha
Helix 21
21
B
36 40Right-handed 310
Helix 22
22
B
41 48Right-handed alpha
Helix 23
23
B
48 78Right-handed alpha
Helix 24
24
B
81 86Right-handed alpha
Helix 25
25
B
89 101Right-handed alpha
Helix 26
26
B
101 135Right-handed alpha
Helix 27
27
B
143 145Right-handed 310
Helix 28
28
B
165 172Right-handed alpha
Helix 29
29
B
187 189Right-handed 310
Helix 30
30
B
190 200Right-handed alpha
Helix 31
31
B
214 224Right-handed alpha
Helix 32
32
B
231 239Right-handed alpha
Helix 33
33
B
248 260Right-handed alpha
Helix 34
34
B
261 263Right-handed 310
Helix 35
35
B
268 286Right-handed alpha
Helix 36
36
B
289 303Right-handed alpha
Helix 37
37
C
5 21Right-handed alpha
Helix 38
38
C
23 35Right-handed alpha
Helix 39
39
C
36 40Right-handed 310
Helix 40
40
C
41 48Right-handed alpha
Helix 41
41
C
48 77Right-handed alpha
Helix 42
42
C
78 80Right-handed 310
Helix 43
43
C
81 86Right-handed alpha
Helix 44
44
C
89 101Right-handed alpha
Helix 45
45
C
101 136Right-handed alpha
Helix 46
46
C
143 145Right-handed 310
Helix 47
47
C
165 172Right-handed alpha
Helix 48
48
C
187 189Right-handed 310
Helix 49
49
C
190 200Right-handed alpha
Helix 50
50
C
214 224Right-handed alpha
Helix 51
51
C
231 239Right-handed alpha
Helix 52
52
C
248 264Right-handed alpha
Helix 53
53
C
268 286Right-handed alpha
Helix 54
54
C
289 304Right-handed alpha
Helix 55
55
D
5 21Right-handed alpha
Helix 56
56
D
23 35Right-handed alpha
Helix 57
57
D
36 40Right-handed 310
Helix 58
58
D
41 48Right-handed alpha
Helix 59
59
D
48 78Right-handed alpha
Helix 60
60
D
81 86Right-handed alpha
Helix 61
61
D
89 101Right-handed alpha
Helix 62
62
D
101 136Right-handed alpha
Helix 63
63
D
143 145Right-handed 310
Helix 64
64
D
165 172Right-handed alpha
Helix 65
65
D
187 189Right-handed 310
Helix 66
66
D
190 200Right-handed alpha
Helix 67
67
D
214 224Right-handed alpha
Helix 68
68
D
231 239Right-handed alpha
Helix 69
69
D
248 261Right-handed alpha
Helix 70
70
D
268 286Right-handed alpha
Helix 71
71
D
289 302Right-handed alpha
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There are 4 sheets in PDB entry 2GB7. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
159 163anti-parallel
Strand 3
A
177 182anti-parallel
Strand 4
A
204 208parallel
Strand 5
A
226 230parallel
Strand 6
A
245 247parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 141first strand
Strand 2
B
161 163anti-parallel
Strand 3
B
177 181anti-parallel
Strand 4
B
204 207parallel
Strand 5
B
226 230parallel
Strand 6
B
245 247parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
140 141first strand
Strand 2
C
159 163anti-parallel
Strand 3
C
177 182anti-parallel
Strand 4
C
204 208parallel
Strand 5
C
226 230parallel
Strand 6
C
245 247parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
140 141first strand
Strand 2
D
159 163anti-parallel
Strand 3
D
177 181anti-parallel
Strand 4
D
204 207parallel
Strand 5
D
226 230parallel
Strand 6
D
245 247parallel
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