Analysis of interatomic Contacts of Structural Units in PDB entry:
2GDZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GDZ entry

There is 1 chain in PDB entry 2GDZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 0GLN 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2GDZ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
15 28Right-handed alpha
Helix 2
2
A
38 50Right-handed alpha
Helix 3
3
A
54 56Right-handed 310
Helix 4
4
A
67 83Right-handed alpha
Helix 5
5
A
99 108Right-handed alpha
Helix 6
6
A
108 123Right-handed alpha
Helix 7
7
A
124 127Right-handed 310
Helix 8
8
A
138 142Right-handed 310
Helix 9
9
A
148 173Right-handed alpha
Helix 10
10
A
188 193Right-handed alpha
Helix 11
11
A
196 201Right-handed alpha
Helix 12
12
A
202 205Right-handed 310
Helix 13
13
A
206 218Right-handed alpha
Helix 14
14
A
221 235Right-handed alpha
Helix 15
15
A
261 265Right-handed 310
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There is 1 sheet ( A) in PDB entry 2GDZ.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
58 62first strand
Strand 2
A
31 36parallel
Strand 3
A
7 11parallel
Strand 4
A
87 90parallel
Strand 5
A
131 136parallel
Strand 6
A
176 183parallel
Strand 7
A
242 246parallel
Strand 8
A
250 253anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il